Detail information of BGIOSGA014979_circ_g.1


General Information
CircRNA Name BGIOSGA014979_circ_g.1
ID in PlantcircBase osi_circ_014422
Alias Chr04:23309490_23310433(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20930861-20931804  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014979
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014979-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAATTTCCAGCAACCTTGTTAACTTCCAGGAAACCATAAATATTGCATCCTTCTCCTTCTTC
ATCCTTTATACTCTGAAGGAAGCCTTCCCTTTTGCAccttaattggcgaaaggtcgtaaaagaa
aaatactccaggaacagcctgtatccgaccgctctcactacttctaaaatgttccgtcacagaa
aactgcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTAATTGGCGAAAGGTCGTAAAAGAAAAATACTCCAGGAACAGCCTGTATCCGACCGCTCTC
ACTACTTCTAAAATGTTCCGTCACAGAAAACTGCAGCAAGGAATAACAGCATTTTAAGATATGT
TTAAAATCGTATCCATCCATACATACATGTGCATAGGTGAACTTGACGATACTTGTGCACATGA
GGGAAAAAAGGAAGGCATTACCTGATTCGAAAGAATAATGTGTTCATTTATGTCTGTGTAGACA
GTGGGAACAACCTGAAAAAAAACACAATATTATCATCACATTTCCTATATCATGCTATAATATC
ACGTGCAATGAAATAAGCAACATGATTTAGCATTCCATACTTTTTCCTAAGATAGTTAAAGAGT
ATAGGACAGACCTTGATGAAGTATTGGTACATTCCATATGATGAATGTTGCATCCATTGTGCCC
TGATATTTTACAAACAGAGAGATCTTAGAAATGTTTAGTATCACTTTTATTATTCTTAGGCGCA
TGCACTTAATTCTAATAAACATAGAAAAGGACACAATGAAATGAAAACATGAGAAAAACAAGCT
ACCCGTCAAGAGGATTAACCACACCAGGAAAGCGTTGTCCAAAACTTAACTTATTTATTTTATG
GCTGACCTGGAACATAAAGAATAAAGTAAAAGTTGGAATATTAAAGAAAGAATGTTCACATGGA
AACAATAATTTTCCTGCCTGCCAGTATTCACAGTTAGAAATCATGCTCAAGTATTATTACATTG
AAGCTGTCCTTTTGGAATGGAAGCAAGTCGTGGACATGAACATTTGCCTTCTGGAAGCTTTTCC
CTGGAGCAAAGTGGAAATTTCCAGCAACCTTGTTAACTTCCAGGAAACCATAAATATTGCATCC
TTCTCCTTCTTCATCCTTTATACTCTGAAGGAAGCCTTCCCTTTTGCA
Conservation Information
Conserved circRNAs osa_circ_024036
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021