Detail information of BGIOSGA001480_circ_g.2


General Information
CircRNA Name BGIOSGA001480_circ_g.2
ID in PlantcircBase osi_circ_009875
Alias Chr01:20497319_20497486(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 21953647-21953814  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA001480
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001480_circ_g.1 BGIOSGA001480_circ_g.3 BGIOSGA001480_circ_igg.1 BGIOSGA001480_circ_g.2 BGIOSGA001480_circ_igg.3 BGIOSGA001480_circ_g.4 BGIOSGA001480_circ_igg.5 BGIOSGA001480_circ_igg.6 BGIOSGA001480_circ_igg.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA001480-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTCTGTCTTTCTCAGTCTTGACCAAGAAAAAGTTTTTCAAGTGGAAGATTATCAATGGTTT
CAATCTTAAAATTTCACCAGcagcatagacaagtccgagcaagaaatagagctgtatttgaggc
tcatttgagtcaaaaccaatgcttccagggtccattgctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCATAGACAAGTCCGAGCAAGAAATAGAGCTGTATTTGAGGCTCATTTGAGTCAAAACCAAT
GCTTCCAGGGTCCATTGCTTCTTCTCTGTCTTTCTCAGTCTTGACCAAGAAAAAGTTTTTCAAG
TGGAAGATTATCAATGGTTTCAATCTTAAAATTTCACCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021