Detail information of Zm00001d030173_circ_g.2


General Information
CircRNA Name Zm00001d030173_circ_g.2
ID in PlantcircBase zma_circ_006595
Alias zma_circ_0000226, GRMZM2G159992_C1
Organism Zea mays
Position chr1: 110383530-110386064  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d030173
Parent gene annotation Calmodulin-binding receptor-like cytoplasmic kinase 3
Parent gene strand -
Alternative splicing Zm00001d030173_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d030173_T016:4
Zm00001d030173_T003:3
Zm00001d030173_T024:2
Zm00001d030173_T006:4
Zm00001d030173_T021:4
Zm00001d030173_T005:4
Zm00001d030173_T022:2
Zm00001d030173_T011:4
Zm00001d030173_T007:4
Zm00001d030173_T017:2
Zm00001d030173_T013:4
Zm00001d030173_T001:4
Zm00001d030173_T009:3
Zm00001d030173_T014:4
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F:TGACGTGGCTCATGCACTTAC
R:CACAGCATAAGAGAATCACACCTG
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATTATTTTCATTCAACCCAGACCTTTCACATGCATTCCTTGAGCTATTTTCTGTGGACCACC
TCAAGAGCTTCCTTGGCACATCTTGATGTAAAGTTGctgcatacagatgaagataagtaagtgc
atgagccacgtcaattgcaatttctagacgctgattaaaatctaggactcttccatgttgacct
gcagaatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 768
Transcript exons: 110383530-110383619,110383702-110383867,110384183-110384
445,110385816-110386064
CTGCATACAGATGAAGATAAGTAAGTGCATGAGCCACGTCAATTGCAATTTCTAGACGCTGATT
AAAATCTAGGACTCTTCCATGTTGACCATCTAGATGTTCTCTAAGAGTACCATTTGGAACATAC
TCAGTGATGATAATGCGCTCATTTCCTTTATCAGTAAAACCCAGTAACCTCACCAAATTTCGGT
GGTCTATCTTAGCAAGCAAGTCTACTTCATTGCTGAACTCATCCCTAGGACCTGCAAACTGATC
CTTTTTAGCTCTCTTGACCGCAACAACATTGCCATCTGGCAATACAGCCCTGTAGACCATCCCA
AATCCTCCTTCACCTAACTTAAATGAAGGTGAGAAGTTCTGAGTTGCCCTGAGGATCTGCTGGA
TGCTTAAGTTGACAGATCCAACTCTAGCTATCTGTGGAGACGGCGCAAATCTAGAGGGACTTGG
AGGTATTCGATGTGGAGTTGGTGGGACTTTCTCAGATGACATGCTTCCTTCATAGGATGAAACT
GATTCAAGTGCGTTGCGCTGAATGGTTGCATTGTCATGCCTGCTGACTTCTTTCCTTTCAGCAT
GAAAGCATGGTAACATAAGGCCACAGCATAAGAGAATCACACCTGGCACAGCCAGGAGATGCTC
CTGCTTTTCTGAAGAATCACCAATGTCCTGATTATTTTCATTCAACCCAGACCTTTCACATGCA
TTCCTTGAGCTATTTTCTGTGGACCACCTCAAGAGCTTCCTTGGCACATCTTGATGTAAAGTTG

Genomic sequence CTGCATACAGATGAAGATAAGTAAGTGCATGAGCCACGTCAATTGCAATTTCTAGACGCTGATT
AAAATCTAGGACTCTTCCATGTTGACCTGCAGAATGAAGGCATGTAATGTTTGAAGGTATTCAA
ATTGATCGAAAAGTGAAGAAAACAATATGGGAAGCACAATTTACCATCTAGATGTTCTCTAAGA
GTACCATTTGGAACATACTCAGTGATGATAATGCGCTCATTTCCTTTATCAGTAAAACCCAGTA
ACCTCACCAAATTTCGGTGGTCTATCTTAGCAAGCAAGTCTACTTCATTGCTGAACTCATCCCT
AGGACCTGCAAACTGATCCTGTAACAGCAGAGCAAGTTATGCATAGGATTGGGTGGAGGGCGCC
AGCGCAGCTCCAACAACACCCAGGAAAAAACTTCATTCGTTGTTGCCAGAGGCAGACAAATTTA
CAGACAAACTATTGAGCTGAGGTACAAATATAAGTTGTAAAATATTTTATAACTTTATTAAAAT
ATAGTGAAATAGATATGAAGAGAACATAATTTGGCAAGGAATAGAATTTAACTCAATATATGCT
GAAAAAGCCCATGAATGAGAATAGTCAATAGAGTTTAATAACTAACATGTATAAGACATGAGGT
AGCATCAGATTACCTTTTTAGCTCTCTTGACCGCAACAACATTGCCATCTGGCAATACAGCCCT
GTAGACCATCCCAAATCCTCCTTCACCTAACTTAAATGAAGGTGAGAAGTTCTGAGTTGCCCTG
AGGATCTGCTGGATGCTTAAGTTGACAGATCCAACTCTAGCTATCTGTGGAGACGGCGCAAATC
TAGAGGGACTTGGAGGTATTCGATGTGGAGTTGGTGGGACTTTCTCAGATGACATGCTTCCTTC
ATAGGATGAAACTGATTCAACTGAGAATATACAATTTGTTAAGGACAATGTTCCAACATAGTTA
CAACAAAAAAAATAAAAAACTGAAACAATATAATCAAAGGATACATGGTTTACATTATGGAAAT
GTCAAAATAGCACCAGACTAGCAATCAACAGTAAACCACTAAACCAGAACAGAGCTTGTCTTTT
CTTTTATGGATTATTCTATACCGATTCCAGAAACTAACCACATGTCAGTCTCGTCCCAGTAACT
ACTGAGTTGGAATACAGTATACAGATGGACTACAGGACAATGAGTATACTATTGAATTGTTAAA
GTAGTTTTGGTTGGTATTACCTGAGAAAAATGATAGTCGTATGACGATTATGACTTAGTTCAAT
AACCATTCTTGATAAACTTCACAAACAACTAACAATAATAAATATAAATTATCCTAGTAGTGGT
TGAAGTAATTTCTACCTCTGATCTTTCATACACTATCACGTCGAGTAAAACCTGATAAAGATGA
CAGAACTTTTTAAGGGACAGTTTGGCAGGCTTCTTCTAAAATTGGCTTCAGCTTTGGACCAGCT
TCTCTAGGGGAGAAGCATTTTTGTAAAAAAATTTTTGGCAAAATAGCTTTGGAGAGTATTTTTT
AGATAAGGAGCCGGTAGAAGCTAAATTTTTTTGGCTCTGGTTCCTAGTTCAAAAGGTAGAGGCT
CAGCTCCTTGGTGGCTTCAGGGGCGAAGCCATTTTTTGGCACCCGATTTTGTAGGGTGTTTTGA
GAAGCCAGAGCCATATACAACCCTTACAAAGTCTCATAAAACGGAGTGAATGCATTAACCCTCG
ACCCGGGTTCACGGGGTCATTTTCGACCATGCAGTGTAAAAACCTCCCGCAAGTAGCACATCAC
GTACCTTGACCGTATTCCTCGACCCTATTGACCAAATAACTATGTGATTGAGCCCTACCAACGG
GCCCTTAACACAAAGATATGGCCTAACCCTTATCAAAAGAGATAAGTAAACAACCAACTCTCAA
ACAACAATAGCACCATAGTCCATAAGGACTAATTTCTATTGACATATAGATGAAAAGCAATAAA
AAAAGTTAAACAGGTGAAAATAAACTAAATGTACACCAGTCATTTTTTGAAAGGAAAGATTATC
ATAAAGCTCTCTTCCTAATCTAGTACCAGAAAATTCTCATGTAATAAAGACAAGCGAGCTACGC
AAAACTTTTGAAAATACCCAGCTCAATATCACCTATCCAACTTCAGTCATAGACAACTATTCTT
CAGTATATTCAGACTAAACCCCCCTTCAGTAGACAATGAAAATATTTTGGGTTCACTAAAAAAT
GAGGGGGCAGACAACAAGAATAGAATTAACTGAAAGATAAACTCACGTGCGTTGCGCTGAATGG
TTGCATTGTCATGCCTGCTGACTTCTTTCCTTTCAGCATGAAAGCATGGTAACATAAGGCCACA
GCATAAGAGAATCACACCTGGCACAGCCAGGAGATGCTCCTGCTTTTCTGAAGAATCACCAATG
TCCTGATTATTTTCATTCAACCCAGACCTTTCACATGCATTCCTTGAGCTATTTTCTGTGGACC
ACCTCAAGAGCTTCCTTGGCACATCTTGATGTAAAGTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.070052022
Functional Information
Coding potential Y
Potential coding position 110384411-110383550(+)
110383561-110386031(-)
110384418-110383532(-)
Potential amino acid sequence MTCFLHRMKLIQLAQPGDAPAFLKNHQCPDYFHSTQTFHMHSLSYFLWTTSRASLAHLDVKLLH
TDEDK*(+)
MHLLIFICMQQLYIKMCQGSS*(-)
MSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLSIQQILRATQNFSPSFKLGEGGFGMVYRAV
LPDGNVVAVKRAKKDQFAGPRDEFSNEVDLLAKIDHRNLVRLLGFTDKGNERIIITEYVPNGTL
REHLDGQHGRVLDFNQRLEIAIDVAHALTYLHLYAATLHQDVPRKLLRWSTENSSRNACERSGL
NENNQDIGDSSEKQEHLLAVPVESVSSYEGSMSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVN
LSIQQILRATQNFSPSFKLGEGGFGMVYRAVLPDGNVVAVKRAKKDQFAGPRDEFSNEVDLLAK
IDHRNLVRLLGFTDKGNERIIITEYVPNGTLREHLDGQHGRVLDFNQRLEIAIDVAHALTYLHL
YAATLHQDVPRKLLRWSTENSSRNACERSGLNENNQDIGDSSEKQEHLLAVPVESVSSYEGSMS
SEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLSIQQILRATQNFSPSFKLGEGGFGMVYRAVLP
DGNVVAVKRAKKDQFAGPRDEFSNEVDLLAKIDHRNLVRLLGFTDKGNERIIITEYVPNGTLRE
HLDGQHGRVLDFNQRLEIAIDVAHALTYLHLYAATLHQDVPRKLLRWSTENSSRNACERSGLNE
NNQDIGDSSEKQEHLLAVPVESVSSYEGSMSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLS
IQQILRATQNFSPSFKLGEGGFGMVYRAVLPDGNVVAVKRAKKDQFAGPRDEFSNEVDLLAKID
HRNLVRLLGFTDKGNERIIITEYVPNGTLREHLDGQHGRVLDFNQRLEIAIDVAHALTYLHLYA
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019