Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d030173_circ_g.2 |
| ID in PlantcircBase | zma_circ_006595 |
| Alias | zma_circ_0000226, GRMZM2G159992_C1 |
| Organism | Zea mays |
| Position | chr1: 110383530-110386064 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ, CIRI2 |
| Parent gene | Zm00001d030173 |
| Parent gene annotation |
Calmodulin-binding receptor-like cytoplasmic kinase 3 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d030173_circ_g.1 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d030173_T016:4 Zm00001d030173_T003:3 Zm00001d030173_T024:2 Zm00001d030173_T006:4 Zm00001d030173_T021:4 Zm00001d030173_T005:4 Zm00001d030173_T022:2 Zm00001d030173_T011:4 Zm00001d030173_T007:4 Zm00001d030173_T017:2 Zm00001d030173_T013:4 Zm00001d030173_T001:4 Zm00001d030173_T009:3 Zm00001d030173_T014:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.070052022 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
110384411-110383550(+) 110383561-110386031(-) 110384418-110383532(-) |
| Potential amino acid sequence |
MTCFLHRMKLIQLAQPGDAPAFLKNHQCPDYFHSTQTFHMHSLSYFLWTTSRASLAHLDVKLLH TDEDK*(+) MHLLIFICMQQLYIKMCQGSS*(-) MSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLSIQQILRATQNFSPSFKLGEGGFGMVYRAV LPDGNVVAVKRAKKDQFAGPRDEFSNEVDLLAKIDHRNLVRLLGFTDKGNERIIITEYVPNGTL REHLDGQHGRVLDFNQRLEIAIDVAHALTYLHLYAATLHQDVPRKLLRWSTENSSRNACERSGL NENNQDIGDSSEKQEHLLAVPVESVSSYEGSMSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVN LSIQQILRATQNFSPSFKLGEGGFGMVYRAVLPDGNVVAVKRAKKDQFAGPRDEFSNEVDLLAK IDHRNLVRLLGFTDKGNERIIITEYVPNGTLREHLDGQHGRVLDFNQRLEIAIDVAHALTYLHL YAATLHQDVPRKLLRWSTENSSRNACERSGLNENNQDIGDSSEKQEHLLAVPVESVSSYEGSMS SEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLSIQQILRATQNFSPSFKLGEGGFGMVYRAVLP DGNVVAVKRAKKDQFAGPRDEFSNEVDLLAKIDHRNLVRLLGFTDKGNERIIITEYVPNGTLRE HLDGQHGRVLDFNQRLEIAIDVAHALTYLHLYAATLHQDVPRKLLRWSTENSSRNACERSGLNE NNQDIGDSSEKQEHLLAVPVESVSSYEGSMSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLS IQQILRATQNFSPSFKLGEGGFGMVYRAVLPDGNVVAVKRAKKDQFAGPRDEFSNEVDLLAKID HRNLVRLLGFTDKGNERIIITEYVPNGTLREHLDGQHGRVLDFNQRLEIAIDVAHALTYLHLYA (-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Ma et al., 2021b;Zhang et al., 2019 |