Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d030173_circ_g.2 |
ID in PlantcircBase | zma_circ_006595 |
Alias | zma_circ_0000226, GRMZM2G159992_C1 |
Organism | Zea mays |
Position | chr1: 110383530-110386064 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d030173 |
Parent gene annotation |
Calmodulin-binding receptor-like cytoplasmic kinase 3 |
Parent gene strand | - |
Alternative splicing | Zm00001d030173_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d030173_T016:4 Zm00001d030173_T003:3 Zm00001d030173_T024:2 Zm00001d030173_T006:4 Zm00001d030173_T021:4 Zm00001d030173_T005:4 Zm00001d030173_T022:2 Zm00001d030173_T011:4 Zm00001d030173_T007:4 Zm00001d030173_T017:2 Zm00001d030173_T013:4 Zm00001d030173_T001:4 Zm00001d030173_T009:3 Zm00001d030173_T014:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.070052022 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
110384411-110383550(+) 110383561-110386031(-) 110384418-110383532(-) |
Potential amino acid sequence |
MTCFLHRMKLIQLAQPGDAPAFLKNHQCPDYFHSTQTFHMHSLSYFLWTTSRASLAHLDVKLLH TDEDK*(+) MHLLIFICMQQLYIKMCQGSS*(-) MSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLSIQQILRATQNFSPSFKLGEGGFGMVYRAV LPDGNVVAVKRAKKDQFAGPRDEFSNEVDLLAKIDHRNLVRLLGFTDKGNERIIITEYVPNGTL REHLDGQHGRVLDFNQRLEIAIDVAHALTYLHLYAATLHQDVPRKLLRWSTENSSRNACERSGL NENNQDIGDSSEKQEHLLAVPVESVSSYEGSMSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVN LSIQQILRATQNFSPSFKLGEGGFGMVYRAVLPDGNVVAVKRAKKDQFAGPRDEFSNEVDLLAK IDHRNLVRLLGFTDKGNERIIITEYVPNGTLREHLDGQHGRVLDFNQRLEIAIDVAHALTYLHL YAATLHQDVPRKLLRWSTENSSRNACERSGLNENNQDIGDSSEKQEHLLAVPVESVSSYEGSMS SEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLSIQQILRATQNFSPSFKLGEGGFGMVYRAVLP DGNVVAVKRAKKDQFAGPRDEFSNEVDLLAKIDHRNLVRLLGFTDKGNERIIITEYVPNGTLRE HLDGQHGRVLDFNQRLEIAIDVAHALTYLHLYAATLHQDVPRKLLRWSTENSSRNACERSGLNE NNQDIGDSSEKQEHLLAVPVESVSSYEGSMSSEKVPPTPHRIPPSPSRFAPSPQIARVGSVNLS IQQILRATQNFSPSFKLGEGGFGMVYRAVLPDGNVVAVKRAKKDQFAGPRDEFSNEVDLLAKID HRNLVRLLGFTDKGNERIIITEYVPNGTLREHLDGQHGRVLDFNQRLEIAIDVAHALTYLHLYA (-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |