Detail information of AT2G04790_circ_g.1


General Information
CircRNA Name AT2G04790_circ_g.1
ID in PlantcircBase ath_circ_012810
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1680031-1680402  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method circRNA_finder
Parent gene AT2G04790
Parent gene annotation unknown protein
Parent gene strand +
Alternative splicing AT2G04790_circ_g.2
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G04790.8:2
AT2G04790.12:1
AT2G04790.3:2
AT2G04790.5:1
AT2G04790.14:1
AT2G04790.7:2
AT2G04790.15:2
AT2G04790.2:2
AT2G04790.16:2
AT2G04790.6:2
AT2G04790.13:1
AT2G04790.11:2
AT2G04790.1:1
AT2G04790.9:2
AT2G04790.4:1
AT2G04790.10:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGGAGCGACTTCCAAGAAGCTAATGCTATAGATGAAACAAATGGTCATTTATCTTATCTACT
AAGATTTTAGACCCGACAATTATGATGTGATAATTAaaggttgaagaatgttccaagacaaaga
tgttggatggttggaccatctaaagggaatgatgctatggaaatggcaatggagtttaataagt
catgggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGGTTGAAGAATGTTCCAAGACAAAGATGTTGGATGGTTGGACCATCTAAAGGGAATGATGCT
ATGGAAATGGCAATGGAGTTTAATAAGTCATGGGAGACTGATTTGAGAGTTGGATTTCATGATT
GCCGACATTATACCAATGGTTTAGTGTTATACAAGCTTTAATTTAATCAAGAAGACTTTGGTTT
TTATTTGTTTCTAAGTGTTTTTGGTTTTTAATCTTTTGGAATACAGAACTTGTCCAACATCTTA
CCGGAGAAATGCAAATTGTGGAGCGACTTCCAAGAAGCTAATGCTATAGATGAAACAAATGGTC
ATTTATCTTATCTACTAAGATTTTAGACCCGACAATTATGATGTGATAATTA
Conservation Information
Conserved circRNAs NA
PMCS 0.171861962
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017