Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA012159_circ_g.2 |
ID in PlantcircBase | osi_circ_004653 |
Alias | 3:7099450|7100007 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 7099450-7100007 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA012159 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA012159_circ_g.1 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA012159-TA:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7099567-7100000(-) 7099520-7100004(+) |
Potential amino acid sequence |
MLFIERCVNQRIPPAMRSSSESNVEAAIAIDPLLIVAYILA*(-) MAGGILWFTHLSMKSINVYKYPIGKLRVQPVGIIIFAAVMATLGFQVFVQAVEKLIVNETPDKL TPVQLTWLYSIMIFATVVKLALWLYCRTSGNKIVRAYAKIYATIKSGSIAIAASTLDSLLDLMA GGILWFTHLSMKSINVYKYPIGKLRVQPVGIIIFAAVMATLGFQVFVQAVEKLIVNETPDKLTP VQLTWLYSIMIFATVVKLALWLYCRTSGNKIVRAYAKIYATIKSGSIAIAASTLDSLLDLMAGG ILWFTHLSMKSINVYKYPIGKLRVQPVGIIIFAAVMATLGFQVFVQAVEKLIVNETPDKLTPVQ LTWLYSIMIFATVVKLALWLYCRTSGNKIVRAYAKIYATIKSGSIAIAASTLDSLLDLMAGGIL WFTHLSMKSINVYKYPIGKLRVQPVGIIIFAAVMATLGFQVFVQAVEKLIVNETPDKLTPVQLT WLYSIMIFATVVKLALWLYCRTSGNKIVRAYAK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |