Detail information of BGIOSGA012159_circ_g.2


General Information
CircRNA Name BGIOSGA012159_circ_g.2
ID in PlantcircBase osi_circ_004653
Alias 3:7099450|7100007
Organism Oryza sativa ssp. indica
Position chr3: 7099450-7100007  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012159
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012159_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012159-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGCTATATTCTATCATGATTTTTGCAACAGTAGTTAAGCTAGCCCTCTGGCTCTACTGCAGA
ACATCTGGTAACAAGATAGTCCGTGCCTATGCTAAGatatatgctacaattaaaagtggatcaa
ttgctatagctgcctcgacattggactcgctgcttgatctcatggctggcggtatcctttggtt
cacacatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATATGCTACAATTAAAAGTGGATCAATTGCTATAGCTGCCTCGACATTGGACTCGCTGCTTG
ATCTCATGGCTGGCGGTATCCTTTGGTTCACACATCTCTCGATGAAGAGCATCAACGTCTACAA
GTATCCTATTGGTAAACTGAGGGTGCAGCCTGTTGGAATCATCATCTTTGCTGCTGTAATGGCT
ACATTAGGTATGCTTGCAACTTTGCCAGGACAAGAATGGACAATCAAGTCATGTCTTTACTTGC
TTTCTTTGTATATGCAACAGTATTGTTGTCTTCAAACTACAAAATTTATTACTCAACTTAGTAT
GGTCTTTGTGCCAAAATTATGCATTAACACAGCAATGTGCTTTTTATTTGCATTTCCAGGATTC
CAAGTATTTGTTCAAGCTGTGGAAAAGCTGATAGTGAACGAGACTCCAGATAAATTGACTCCAG
TGCAACTCACATGGCTATATTCTATCATGATTTTTGCAACAGTAGTTAAGCTAGCCCTCTGGCT
CTACTGCAGAACATCTGGTAACAAGATAGTCCGTGCCTATGCTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 7099567-7100000(-)
7099520-7100004(+)
Potential amino acid sequence MLFIERCVNQRIPPAMRSSSESNVEAAIAIDPLLIVAYILA*(-)
MAGGILWFTHLSMKSINVYKYPIGKLRVQPVGIIIFAAVMATLGFQVFVQAVEKLIVNETPDKL
TPVQLTWLYSIMIFATVVKLALWLYCRTSGNKIVRAYAKIYATIKSGSIAIAASTLDSLLDLMA
GGILWFTHLSMKSINVYKYPIGKLRVQPVGIIIFAAVMATLGFQVFVQAVEKLIVNETPDKLTP
VQLTWLYSIMIFATVVKLALWLYCRTSGNKIVRAYAKIYATIKSGSIAIAASTLDSLLDLMAGG
ILWFTHLSMKSINVYKYPIGKLRVQPVGIIIFAAVMATLGFQVFVQAVEKLIVNETPDKLTPVQ
LTWLYSIMIFATVVKLALWLYCRTSGNKIVRAYAKIYATIKSGSIAIAASTLDSLLDLMAGGIL
WFTHLSMKSINVYKYPIGKLRVQPVGIIIFAAVMATLGFQVFVQAVEKLIVNETPDKLTPVQLT
WLYSIMIFATVVKLALWLYCRTSGNKIVRAYAK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021