Detail information of BGIOSGA014789_circ_g.5


General Information
CircRNA Name BGIOSGA014789_circ_g.5
ID in PlantcircBase osi_circ_014528
Alias Chr04:25531396_25532745(ZS97RS2), Chr04:25509041_25510390(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23526010-23526681  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA014789
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014789_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-NN
Number of exons covered BGIOSGA014789-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGAATAACACAACAGATTGCAAGTACCTCACGCAGCTCGAGAAGTTGATCTCTTGTATAGCG
AACACGCTCGCGCACCTCAAAATTTGGATCACCAATcagagtaaacaagtaaccaaaacttata
tcgaaagaaagctgcgactcttccacttgaggctagtaggtacagtttcacttaaatatcctgt
gagtgcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAGTAAACAAGTAACCAAAACTTATATCGAAAGAAAGCTGCGACTCTTCCACTTGAGGCTAG
TAGGTACAGTTTCACTTAAATATCCTGTGAGTGCCTCTATTTCCATCCTAGATCGGTGCTGCTT
TGTATATAGCATAGTCTAAAGTTAAATCATTCATCACTGAAATTTCCAATGATATGCTAGCAAC
GCATACCATCGAAGTACTCATACCAGCAAAATTTCTGTTATAACCATTTCAATGTGGCCAATTT
AGACACTTCTACATTTATTGCAGCCAAATTTGTATGTGTTTCAACTTTCACTGCACGAATACCT
AGGGGACATTAACGTGGTATATTTCAATGTTTGTGTGCTATGCACCTAGTTGCAGAAACACCAC
CTACGTGATATTGTTTTCCATGTCTGACGTGTTGAAAAGTATTCCAAATAGAAATTTCTGCTCT
AATGTAGCTCAAATGTGCCAGATACGCTGCAAGCATTTTTCAACAAAACCAAACGACAGGGAGC
ACGTAAAGCAGAACATGTCTACTAAGATATTCACAGCAAATTTCCCATCCAGAAACTGATATTG
AATAACACAACAGATTGCAAGTACCTCACGCAGCTCGAGAAGTTGATCTCTTGTATAGCGAACA
CGCTCGCGCACCTCAAAATTTGGATCACCAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021