Detail information of BGIOSGA010790_circ_g.1


General Information
CircRNA Name BGIOSGA010790_circ_g.1
ID in PlantcircBase osi_circ_012976
Alias Chr03:12677832_12682633(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 13847886-13852687  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA010790
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA010790_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA010790-TA:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGTACATTCGCATACAAATTAAAGAATTATATTTGAACCTGAAGCATAGCTGCCTCCTTTTG
TTTTGCTTTAAGTCTTTTCTCTTCTTTCTCTTTAGCccttctgaaacggcacatcaccaccaag
ttgtgttcccatcatcaccatccgtgctacccaacagaagagaatatcaagtccagtttctaga
actgaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCTGAAACGGCACATCACCACCAAGTTGTGTTCCCATCATCACCATCCGTGCTACCCAACA
GAAGAGAATATCAAGTCCAGTTTCTAGAACTGAAGTAGGGTAGAAAGAACGGAGGTCAGCAGTA
TCATCTGGCCAACCAAGTACTGCTAAGGGGAAGAGAGCAGATGAAAACCATGTGTCTAGCACAT
CAGGATCCTGATTTAGGATGAATTTCTTTCCTGGATAACTTTTCTGTGCCTCAACGCTTGCAGC
ACTTTCACTTTTGGCGACTATCCAGCGGTCATTGTCAGAACCTAGAGTTTTCTCCTGGTCATCT
TCTAGTGTCACATACCATGCAGGTACACGGTGTCCCCACCAATGTTGCCTTGAAACACACCAAT
CACGTATATTTTCAAGCCATCTGCAATGACACAAGCAATTGTTCTATCATTTGTTTTCTGTTTA
TTTCATTGATTTGACAAATGACATGATTTTTTAAAAGATGTGACAAATATATAACAAGTATGTA
AAAGTGGATAAATGTACCTATACCAGTCTTGTTCGTACTGCGGGGGAATGATCTCAATCCTCTT
AGACCTTACAGCATCAAGGGCTACCTTGGCCATGGTGTTACAATTAACAAACCACTGCGGGGAT
TTTATCATAGGCTCCACTATGTCGTTAGTTCTTGAACAAATGCCCAAACTCGTTTCGGTATTCT
TTGCACCTTTGTACAAGCCCTTAATTAGCATAATCAAACATCGTCAGAAGTACAGAACTATTTA
GAACGAACTTTATGAAACAAAAAGAAGGCAAAGACTCCCTACCCACCAAGCACACAGGAAAAAC
AAAACATTTTAAGGGTAAAGTTTTATCACTAGCTTCCACAGATATGCAGGATGCCACTAAAACA
TGAGATTCTCTTAATACCCTAATTATGAATGCCCATTACACAATCCCAAAGGAATGACATGATG
CAAGTTATAGTTTTAATAGAGCTCTGTTAAAGTTTTGCATGCCATGTTGTACATTATAATGCAT
ATCTTTGCCTATCTTTTAGAGATTCTGATGCCATAGAAATTTTCTGAAAGTATTTTCCCTCAAA
AAAAATTTTCTGAAAGTATGATTAAACAAATCCATTAATACCTTTGCCTTCAGTGCTTCAATAA
TGCAAATTCGAGCAGTGAATCTTGGCATTCCTTCAAATTGTGCACCCCCATTGCTGTTTATTTT
CCCATCATCTGTCAAGATATTAATGAACTGAAGGTTATTCCGTCTTCCAACCTCAAAGTCATTT
GGGTCATGTGCAGGTGCAATCTGCATAAAAGACCAGCAGACAACAAAATAAGTCAAGTGGAGAT
AGCGAGTGAGCAAGATCCAACTATGTGAAACAAGAGATAGAAACAAATAGCACTAGGCAGAAAT
AAACAAGTAAAACAAGGCACTAGCTCCTACCTTGACAGCCCCAGTACCGAAACTGGGATCAACT
ATCTCAGCATCACAGATTATTTTGAGTTTTCGGCCATTGAAGGGGTGGACTGCATACCGTCCAT
GCAGATGCATATACCTTTTATCCTCAGGATGAACAGCTATTGCTGTATCACCAAGCATTGTTTC
AATTCGAGTTGTTGCAACAACAATCTCACCTAGCCCTTCTTCAAGAGGATAGGCAAAAGATATC
AACACACCAAATTGTACAGGAGTAGCATAACCAGGGATCTTTAACATTGTTTCTTCTTTAAGAT
CAATATGATCAACCTGAAAAAACAGCATTTTCCAATGCAGAAAGACATCTTAGTCATGTATGCG
TAGATTTAATTCGTTTATAATAAACAAAAAAAATGTTCCACAGACCTCTATCTCAGAAATTGAA
GTCAGAAGTGTGCAGTCCCAATTCACAAGGCGGTTATCTCTGAAAAGGAACAAATCATCCGCAA
CATGTGAAAAATTAGCTGGCAACTGAAAAACAAGAATGTACAAATAAAAAGGTTTATCATAGCA
ACATCAATAGGTGAAAATTTTCCATGTTAACACTCAAAAGTCAAAACACAAAGGGTGAGGTAAC
TTACCTATATATCAGGCCTTCCTTGTGTAACCTTACAAAAGCTTCAGTTACAGCATTTGACCTT
TGCTCATCCATTGTAAAAGCCTGATGCCAGGTTGAGATTAGGTTACTAGAGAGTTCGAATTGCA
AAACTATGCATGGTTCAATAGCAAGTAATGTTTTTCCGTAACTGAAAGAAATGGAAATACTACC
TCACGAGACCAATCAAGTGAGGCCCCAAGGCGGTGCAATTGATTCAATATAGTACCACCATACC
GCTCTTTCCATTTGAGAACCTTTCCAACAGATTGAAGAGAAAACGGAATAAGAAAATGTCAAAA
AGGAAATGGTACTGGTGAGGGACATCAAATGATTATTCATAAACTAAAAAGAACTACAGGTGAA
TCTGGATTTTTGCTATTAAGAACAAGAAGTCAATTTGAGCTGCATCATAGGTGATTTGCATTAC
TCATAGGTGATTGTACCTACGCGGTCAAGCTCCTAACCTGTTCATTGCATTAATGTGCCAAATT
TCTCTATTTAACATTGCATTACTCTAACCTGTTGAAATAAGTACAATCACCTATGAAGGCCTAG
GTACAAGAAGTTCTATTGATAAGGTTGCTATTAAAAACATTGCCTACAAGTTTACTCTTAAGTG
TCATTGAGTAATAGAAGAGTTCTTATGAGTAATATCTTAGTTGTCATTTTGGCTGTCATCTTAG
TTGTATGTGTATTGTGTAAGACCTTGGAGCCTATAAATAGAGGCATTGCCCTCTAGTTTTGTAG
TTCACATGTATTCACAACCCTATCAATAGAACTCGATGTTCCTATTTCAGATCTTGGATTAGAT
CTCTTTCTTGAGTTTTAACTTAAGCTCTATTATCTGTGGGATTCAGATTGCCCTTACGGCATTA
TCGACTAGCACATTGAATCTGTTCCTTGAACACATTGTGTTACATCTACCTATCAGCACATCAG
AGTGGTTGCTCCAATATAGTATGCTGCATCACATCAGGTAAAAGAAAACTCAACCCTGGGGGGA
GACCATCAGGGCTTTGTTCTAAGAAGGTGCCACACTTCAAACCTCGGTCAGGTGGGAGTTCGAA
CGACTCCCAGAGTTCAACGCTCTAACCAGTGCACAGAGAGAAGATTGGCGGCATGGAATTAATC
AGACAAAGCAGACAACACTGCCATGGGCAAGAATAAACCATTGGGTGACAAACATAATCATGTC
TTACGGAAAAAAGTGCTTACTTCACAAACAAAATTGTCAGGCCCTATGTCATGCCTTGTCAGAT
TCCTTTCACGCATAAGCTTTTTTTCTACTACAACCTGATGTGCAACAGAAAATAAGTCAAAACA
AAGCCCACTATTAAGGAAGTACATAAAATTGAAGTAGTCAATTGTCCACCAGTGCAAAGTTCAA
AGAAAACAAAACTTTGAACTACAGATGCCAAATTAAATTTATAAAAAATATGAGTGAAATAAAA
AAAGAATTATAAAGGGTACAGAAGCAACAAAAGAAGGTGCAATTTGTAAAGTAAAAAAAGTTGA
CCGTGTATTCGGCGAATGAGCAATTGCTAATTCTAAAGGTAAAGAAATTAATAGAGTGATTCCA
AACATAATTATGAAAGTTCTGCTAAAATTACAGAAGTGCTTTTATTAACATTGCATAAATACCC
TTGTTGAAAGCTATCTTTCAATGGCTGCACATGACAACTACACTGCAATTACTGATTTCTACAT
GTCCATCCCATAAGTTGAATGGCAGAATGTGCTACCAAGATACATCAGCTAATAAACTCTACCA
TCTATAGTTTTATGTTTCATAAGATGAACTCCAGCAGATCGCGAACCGATTGCTAAATGCAGAC
CTGTGTAGCAATGCCAGCATGGTCCACTCCAGGGACCCATAGAGCATTATAACCTGACATCCTC
CGCCATCGTATCATCGCATCCTGCATTGCTCAAAATCATTATCTAGTAAATACAGTTAAAATGT
CATAGACATTTCTACAAGCATTAAAAAATACTACCTCTATAGCCACTGTAAGAGCATGGCCTAT
GTGAAGAGCTCCAGTCACATTTGGAGGTGGCATAACCTGAAAAGAAATAACTTAACTCTTTGCT
GGAAGCTAATCAGCATTTGTGTGAACAATTTGACAATATAAAACGGTGATTTCATATTATGCAG
TTTGCTAAATAAGCTTGTAGCATATCTTGCACAATCTTCATGAGCATGAAACACTTACTATAAC
AAATGGTGGCTTTGTGCTTGCAGAATCTGCCCTAAAATATCCTGATGATTCCCACCAGGCATAC
CATCTGCATCATGAAAATACAAACAAAGGAAGACATGCAGTTCAGCACAAATTTCCAATGCCAT
AAAACCAATAAATTTAAACTACCAATTTGGCATCATACGATTTCTCAACCGTGCTTGGGCAATA
CTGATTGGCCATTTGAGGTGCAAGCAGTTTCTTCTGCCCATTAGGAGTGTCTTGATCAATAAAA
TCTTCAGGATTTTCATCCTCCACAGCTTTTCCCCTATGTTTTTTCTCAACCTTCTTGAGTACAT
CTAAAGCTGGCTGTGCCTACAGAAACCAAAGCAGTGTGACGAAATAAGTAAAGTCATCTCCAGC
AACCATTTCGTTTCATACAAATCTGGATCAATTGTACATTCGCATACAAATTAAAGAATTATAT
TTGAACCTGAAGCATAGCTGCCTCCTTTTGTTTTGCTTTAAGTCTTTTCTCTTCTTTCTCTTTA
GC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021