Detail information of BGIOSGA004534_circ_g.5


General Information
CircRNA Name BGIOSGA004534_circ_g.5
ID in PlantcircBase osi_circ_002437
Alias 1:35933589|35934583
Organism Oryza sativa ssp. indica
Position chr1: 35933589-35934583  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA004534
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA004534-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAGTTTAACAGCAGTTGGCCTTTTGTGGACTGCTACTGACTTTGTTGTGAAGGGATTAATAA
GCAAATCTGCTGAGAAAGCAAATGGCATGGATGAAGgattggcaaccattcctgtgcaatgcct
tgatgagtaaggctctgaattcactatttctgttatttttttctttcagtaaaaaccgtgtcga
atgggaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGGCAACCATTCCTGTGCAATGCCTTGATGAGTAAGGCTCTGAATTCACTATTTCTGTTAT
TTTTTTCTTTCAGTAAAAACCGTGTCGAATGGGAGAGGCTCTTTTCCTCCTATTTTCAACGTGG
AAAAGAACTGTGAATAGAATGGTCATGGTTGTCGGCAAATTCTGTGGTAACATGACAGTACGTA
CAGACAGCAGCAATTCAAAAGTTTCGTGTATTTCATTACAGAGAAACGATCTTTTTGCAAAAAA
AAAGAGACAATGGTGCGTATTTTGTCAAGAAATTTTAGTACTTTTGAGGGATTCGATCACCATG
GCTCTTGCATTTTTTTTCTTGCCTTAATGATGCGTGACTTGTCACCATGCATGAAGATGGCATG
TCTGGTTTTCAAAGCAAAGTTCCTACAAATGTAAAACGCATTAAAATAAAAGGAACTACAACTG
CATAGCTTTAGTGTTTGCCTCCTTTCAATATTATTAAAAAGGGCTTAGATATAAGTGTGGTTAA
TTCGAAACTGAAATCTCATGGTAGCTGACTGGGCACCAAAGGGCTTAAGGCAATCTCAGTGACA
TACGGCCCAGACCCATCTTGCATTGAGACAATGAAGATTTCACAAATATTCAGTAACATGTAAG
GAATCATTCATATATACAAACTACAAATACAGTAATCCTCAATTGTTATCTGGTGTATTGAGTA
CTTGCAAAGTAGATGATAGTTGATTTATGAAGAAGGAAACTGATTTTGCCCATGGAGCTGAACA
TGCATGGCTACAGTTCATGAATTATTTGCTTATTATGTTGCAGTCTTCTCTTATGCTTTCTCTT
GTAAATGCGTGCAGATGCATTTTGGTAACCGGAGCTTATGGCACCCAGAAAACTGACATAAACA
TAAGTTTAACAGCAGTTGGCCTTTTGTGGACTGCTACTGACTTTGTTGTGAAGGGATTAATAAG
CAAATCTGCTGAGAAAGCAAATGGCATGGATGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021