Detail information of BGIOSGA008396_circ_g.8


General Information
CircRNA Name BGIOSGA008396_circ_g.8
ID in PlantcircBase osi_circ_003996
Alias 2:22039378|22043500
Organism Oryza sativa ssp. indica
Position chr2: 22039378-22043500  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA008396
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA008396_circ_g.6 BGIOSGA008396_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA008396-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAACTAACAAACATGGAACTGGAAAATCAAGTTCTCCGGCAGCAGGCACTGTTTCGTTCTCCT
GTGAGAACAATACCTGAAAACACGTCTCCAAAAGCTatagggaaaacgaaagtgtttctgcgtg
ctggtcagatggctgagctagatgctcgaaggactgaggtcttgagcagttctgctagcaaaat
ccagagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAGGGAAAACGAAAGTGTTTCTGCGTGCTGGTCAGATGGCTGAGCTAGATGCTCGAAGGACTG
AGGTCTTGAGCAGTTCTGCTAGCAAAATCCAGAGAAAAGTTCGATCATACTTGGCTCACAAACA
CTTCATTCAGTTGCGATTATCTGCTACTCAGCTTCAGGCAGTATGCAGAGGTATATTTTTGTGG
AACAATATTGAAAAGACTTTACTCTTGTATGATTTTAAGTGGAGGTAATGCTTATGATCTGTGC
CAACTGAAGGACAAATTGCAAGACATTATTATGAAGACCTCCGTAGGAAGGCTGCGACCTTGAC
AATTCAGACCTATTACCGTATGCATTTTGCAAGGAAAAATTATATAGATCTCTGTTCTGCATCA
ACTACTGTCCAATCTGGTCTACGTGGCATGGCGGCTCGCAAGGAACTCCAGTACCGTCAGCAGA
CAAAAGCTGCAGTGATTATTCAGGTCCATTTTCTGGTCACAATGTATTCTTTTTCTACTGAAAT
TTATGTAAAATTATATCTTTTGTGAGTGAATTGGTTCAAGCTTTGTATATGCATCTTCCTTTAT
TACCTATCACTACCTTAACAATAGTTTTGATATTTTTGTCCATTCAGAGTTACTGTCGCAGTTA
TTTAGCACACTCACAGTACATGGGCTTGAAGAAAGCAGCGATCACAACCCAATGTGCTTGGAGA
GGGAGGTTGGCCAGAAGAGAACTTCGAAAACTTAAAATGGTAAGAACCACCATGTGAACGGTTT
CGCTATGTTTTCTTTTCTTTGACCTTGACTGTTTGTTTCTTCTACATTTGCTATTTCCATTGTG
TTAGACCTAGGCACTAGACTTGGTAATAAAGTCCATCCATAAGAGGTCCGGCATATATATTTAC
CATTTCCTGATGAAACTTGGCTTCGATTTACTCCCTCCTTCCCAAATTGATCATCATATATGTT
TATGTACCAAGACCAAGAATAATTTAAATCACATCAATTAAGACACCATGCACACATTCTCCCA
CAATGCATGCATCGAGTAAAACATCATGCCAATCACACCTTAGCATGCACACATTCTCCCATGT
TGCATTAATTGTATTATGATGAAATCCGTGTCCATGCGGTTACATGATGATCAATTTGAGAAAT
TTTGAATTCCATTATATGATGATCAATTTAGGAAGGAAGGAGTACATCTTTACCTCTGCTGATA
TGCCTTGATGTCACTGCTCATCATGAGCTTGTTATGGTTGCATGGCTGGAAATTACATGAAAGC
AGAATTTCAAATTAGTCTAGTTATAATATGGCAATGCTATTCAAAATTTGAAGTTGTCGATAAC
TTAGTATATACCATACTTTCATGAACCTAGCATGTACCCTCCTATAGATGAAATAAAAGAGCAT
GCTAGCTTTCAAGTTTCGCCAAAACTCCTTTACCTGCAAGTTCATTTAATAGTTGTAAGCCAGC
AGCCTGTCACACTTCTGGTAATATGGATAATCATTAAGACCATAGCTAGAGTTTCAAACAGTCC
TAGTTAGTTCATCTACTTTGGTCCGTTGACTTATATCACTTTATTTTGCTACTTTCAGGCTGCA
AAAGAAACTGGTGCTCTGCAAGCTGCTAAGAATAAATTAGAGAAACAAGTTGAAGAGCTAACTT
GGCGGCTTCAGCTGGAGAAACGCATGAGGGTAAATTCAGAGATTGCTTTGTTTTTACAGTCAGA
CCGTTTATGTTGTATTTGTCTACAGCTGATGTAATTGCATATATTACATCATTAGATTCTCTAT
GATTATATATATATTTCATGTTAAAATATAAATGGGACAAAGAAATAACTTTAGAAAAAAAAAT
GAAATTCACAACTAGTGTACTGGCACAGGAAGGACTTGCTATGCCTAATATTGACAGTTCTAGA
AATATAAGTATTTGCCAACATTTTGGAATTCTTCGTTAATTCCTATCTGGCTGTTCGGAAAAAA
GTTCATCTTTGGCTCTTGTTCACCAAAAGTCTAAATGTAATCTGAAACACCAAAAATACTTAAA
ATAAACAGGTCAAAGCTAACATAGATCTGGTTTTCATGAGTGTGTCTGCTACATGAATTGACCA
TTTGTTGATGTGATACTAATTAGGAGTAAGTATGGTCATGATCATCGAAGCAGGATAAACATTG
ATGACTATGATGAAATGGAATTGTACAGAATGCTAGAGTTATAGCTGAAGAGATTTGTGGAACT
AGATTGTGTAGCTGGAGGCATAGCATAACGAGATGGTGAAATTTGAGGTGTAGTGGGAGATGGT
GGTTCAAGAAATGATGGTGTGACTAGAGTCGGAAAGGTTCAATATAGGTCATATGTCTAATTAA
AGTATAAATTATGTTTAGGAACTGTGTGAAGATGGGGAAGGTAAACGTCTCACCAGAACATCTG
TTCAAAGGTGACATCAGAAGAGGCTTAATATATTGATAGCCCTTATGGGAGATTGTACTCTAGA
TAAACATACAACTAACTACATCTGAGTAGTCAATTTCGTGCTTTCATTAGGAGGAAGCAAGAAA
TAGTACATACTACAAACATGAAAACTGAATTTGATGGTAATCTGGATATCCAAACGATACGCCA
AGGAAGTGGTGGTACCAACCCCATGTCTACTTATACATATTTATGGGATTCTATGGGCACACTA
CCCATTGCTGAGATAGTTCCTAATGTATTCAGCAATTATTTCCTGTGTTTCTATCTTAATCATG
GATGGTTTAAAATTGCAAAAAATGGTTTGTTTGTATTTCAAAATTTTATCTGCGTGCTTGCTTT
TTCATGAATGCCACTTTCCTGGAAGCTTAAGGTGACTAGAGGTTGAGACCAATGGCTGCATTTT
TTTTTCCTGATAGCATGTTCTAATAAACTGCATGCACAATTAAAGATAACATATATATATATAC
TCCCTGGTCATGAAAACATGTTGTTCTGGAGATGTTTCAAGTCAAACTTTTAGAACTTTGAATA
TCATTATCATATTAAACATCTAGAATTGATGCATATGAGTCCTAAATTTGGATTGTTTCAAAAA
ATACTTTTGCAATATTTTGCAATCCTATACAGATTAGCTGTGAAGAAAAACATGATCCCATGAT
TGGAAGGAGTAATTAAGTAAAATCAATTTCTAATCACAACACAGATTTTATTTGTTTCATTTTT
GTTTTACATCTATGAAGTGTCTTATGCAAAGTTTGCTGGCCTGCAGGTTGACATGGAAGAAGCC
AAGTCACAAGAAAATAAGAAGCTGCAACAGAAATTGCAGGAACTTGAATTGCAGTCCAATGAAA
CAAAAGATTTGTTAAAAAGGGAACAAGAAACTGCTAAAGCAGCATGGGAGAAAGCTGCCTTAGT
ACCAGAGGTCCAGGTTGATACAACTCTTGTTAATGAGCTCACAGCTGAAAACGAGAAGCTCAAG
GTAAACATCTTCACTACAGTTGATTCATTGCACATTTGGACTAGCAAGTTTGTCCACTTTCATG
GTAATCCGGACCATTCAGGGTATTATGTATATTGACAAGTGAAGGACATTTATTCCATTTTGTA
AATTGGTAGTGTAGCTTGCCAGGTAAGGAGACCCCTGGATTCTTTTATGAGCATATTAAACATA
CAACCATACTGTTGGCACCAACATTACAAATAGAGTTTCTTTTTTATACAAGTCATGGTATTAC
TGTGTTGTACCACAAAATATAATGAGCTAAATGACTTAATCCTTTTCTTTTATATGTTTAGACA
CTTGTGGCTTCTCTCGAGACAAAAATTGATGAAACGGAACAGAGGTTTGATGAAGTGAAGAAAG
CTAGAGAAGAGTTGCTGAAGAAAGCCACAGATGCAGAGTCAAAGATAAATGGACTAACGAACAC
AATGCTAAGGTCCTAGCTATGGCATTGTTTACATGATATAAAGCATATCTAGATATTGATAACC
CCTCTATATGTGTTCTTTTTAGTTGATTGGCTTCTTTTCCATACAGTCTTCAAGAAAAACTAAC
AAACATGGAACTGGAAAATCAAGTTCTCCGGCAGCAGGCACTGTTTCGTTCTCCTGTGAGAACA
ATACCTGAAAACACGTCTCCAAAAGCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 22039415-22043497(+)
Potential amino acid sequence MAELDARRTEVLSSSASKIQRKVRSYLAHKHFIQLRLSATQLQAVCRELLSQLFSTLTVHGLEE
SSDHNPMCLEREAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKSQENKKLQQKLQ
ELELQSNETKDLLKREQETAKAAWEKAALVPEVQVDTTLVNELTAENEKLKTLVASLETKIDET
EQRFDEVKKAREELLKKATDAESKINGLTNTMLSLQEKLTNMELENQVLRQQALFRSPVRTIPE
NTSPKAIGKTKVFLRAGQMAELDARRTEVLSSSASKIQRKVRSYLAHKHFIQLRLSATQLQAVC
RELLSQLFSTLTVHGLEESSDHNPMCLEREAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRV
DMEEAKSQENKKLQQKLQELELQSNETKDLLKREQETAKAAWEKAALVPEVQVDTTLVNELTAE
NEKLKTLVASLETKIDETEQRFDEVKKAREELLKKATDAESKINGLTNTMLSLQEKLTNMELEN
QVLRQQALFRSPVRTIPENTSPKAIGKTKVFLRAGQMAELDARRTEVLSSSASKIQRKVRSYLA
HKHFIQLRLSATQLQAVCRELLSQLFSTLTVHGLEESSDHNPMCLEREAAKETGALQAAKNKLE
KQVEELTWRLQLEKRMRVDMEEAKSQENKKLQQKLQELELQSNETKDLLKREQETAKAAWEKAA
LVPEVQVDTTLVNELTAENEKLKTLVASLETKIDETEQRFDEVKKAREELLKKATDAESKINGL
TNTMLSLQEKLTNMELENQVLRQQALFRSPVRTIPENTSPKAIGKTKVFLRAGQMAELDARRTE
VLSSSASKIQRKVRSYLAHKHFIQLRLSATQLQAVCRELLSQLFSTLTVHGLEESSDHNPMCLE
REAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKSQENKKLQQKLQELELQSNETK
DLLKREQETAKAAWEKAALVPEVQVDTTLVNELTAENEKLKTLVASLETKIDETEQRFDEVKKA
REELLKKATDAESKINGLTNTMLSLQEKLTNMELENQVLRQQALFRSPVRTIPENTSPKA(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021