Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G13170_circ_g.2 |
ID in PlantcircBase | ath_circ_002357 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 4489115-4489459 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder, circRNA_finder |
Parent gene | AT1G13170 |
Parent gene annotation |
OSBP(Oxysterol binding protein)-related protein 1D |
Parent gene strand | - |
Alternative splicing | AT1G13170_circ_g.1 |
Support reads | 7 |
Tissues | inflorescences, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G13170.1:1 AT1G13170.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.511614038 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4489388-4489117(-) |
Potential amino acid sequence |
MYYVLGDPTTKPKGYDPMTEAVLLWERDKSPTKTRYNLSPFAISLNEITPGMIDKLPPTDSRLR PDQRHLENGEYESANAEKLRLEQLQRQVHGFVQDNRTGEKVAILIGKWDEAMYYVLGDPTTKPK GYDPMTEAVLLWERDKSPTKTRYNLSPFAISLNEITPGMIDKLPPTDSRLRPDQRHLENGEYES ANAEKLRLEQLQRQVHGFVQDNRTGEKVAILIGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWE RDKSPTKTRYNLSPFAISLNEITPGMIDKLPPTDSRLRPDQRHLENGEYESANAEKLRLEQLQR QVHGFVQDNRTGEKVAILIGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERDKSPTKTRYNLS PFAISLNEITPGMIDKLPPTDSRLRPDQRHLENGEYESANAEKLRLEQLQRQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |