Detail information of BGIOSGA031581_circ_g.3


General Information
CircRNA Name BGIOSGA031581_circ_g.3
ID in PlantcircBase osi_circ_002895
Alias 10:18408720|18409636
Organism Oryza sativa ssp. indica
Position chr10: 18408720-18409636  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031581
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031581_circ_g.1 BGIOSGA031581_circ_g.2 BGIOSGA031581_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA031581-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACACAAACAACCTTGGTTTACCTGTGAAGACAAACTTTCCATTTTTTCAAGTTCCTTCTGCTT
TTCCCGCTTAAGACAGTATGGCTTTACAAAATACGTcttgtatttctgaccatgaaatgtgtat
tctacaagtaacagctttggatcaccagggcaaggatcgtagaagcccattattccagacttct
tgatcccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTATTTCTGACCATGAAATGTGTATTCTACAAGTAACAGCTTTGGATCACCAGGGCAAGGA
TCGTAGAAGCCCATTATTCCAGACTTCTTGATCCCCTCATGAAGCTGCAAGTGGTGGAAATTTG
TTGTCAGGCAACCATATTTCGATCAAACGTATAAACCTAATTAACTTTGGAGGAATGTATTGAG
CTACTACAATGAACAAACAATCTGCAAAGGTAAAATAGAGTTAAACATAGCCTAGTATTGGGAA
TATATAACAGGTAATCCCTGTCTATTTGCAAGTTAAAGCCCGCAGGTACCATATTATATTGTTG
ATTTTCCAGTGGAATTACTAGCCAGAAAAGGAAGGATAGATAGGATGCAAAAAATAAACTACAT
ATTATAGCATTTGTTTACCATCAGCTTTGTATTAACAGATAAACTTATATGTGATTGGCACATA
CCTTTAGCTGGCCTGCCTCAGAGACGAGGAAGTTCAGTGGGATGGTCACGTCTAATACTTGTGA
AGCCACATCATCATTCAACTCATTTGATTCGCTGCTCTCTTTAACTTTTTTGCGATTCCCATAC
AGAGCTTTTGTAATCACCAAGCCATCATCCTCCAGCTGTCTATTCTTCTTACGATTTGAGACAG
GTTCTAGTAACTTTTGTGCTTTTTTCGCTGCGCGTCTGGCTTCAGTTAGCTATACAAGAAGGAA
CCTTGGGTGACTAATTCCAAAATAAAACTATGTGAAGGTTCCAGCTAGTAAACTTCCAGTCCGC
CCTTTGCACTGGTGTACATAAGCTGTCTAATACAAGTAAGAATACAAATGACACAAACAACCTT
GGTTTACCTGTGAAGACAAACTTTCCATTTTTTCAAGTTCCTTCTGCTTTTCCCGCTTAAGACA
GTATGGCTTTACAAAATACGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 18409581-18408722(-)
18409210-18408729(+)
18409619-18408811(+)
Potential amino acid sequence MESLSSQLTEARRAAKKAQKLLEPVSNRKKNRQLEDDGLVITKALYGNRKKVKESSESNELNDD
VASQVLDVTIPLNFLVSEAGQLKLHEGIKKSGIMGFYDPCPGDPKLLLVEYTFHGQKYKTYFVK
PYCLKREKQKELEKMESLSSQLTEARRAAKKAQKLLEPVSNRKKNRQLEDDGLVITKALYGNRK
KVKESSESNELNDDVASQVLDVTIPLNFLVSEAGQLKLHEGIKKSGIMGFYDPCPGDPKLLLVE
YTFHGQKYKTYFVKPYCLKREKQKELEKMESLSSQLTEARRAAKKAQKLLEPVSNRKKNRQLED
DGLVITKALYGNRKKVKESSESNELNDDVASQVLDVTIPLNFLVSEAGQLKLHEGIKKSGIMGF
YDPCPGDPKLLLVEYTFHGQKYKTYFVKPYCLKREKQKELEKMESLSSQLTEARRAAKKAQKLL
EPVSNRKKNRQLEDDGLVITKALYGNRKKVKESSESNELNDDVASQVLDVTIPLNFLVSEAGQL
KLHEGIKKSGIMGFYDPCPGDPKLLLVEYTFHGQKYK(-)
MVTSNTCEATSSFNSFDSLLSLTFLRFPYRAFVITKPSSSSCLFFLRFETGSSNFCAFFAARLA
SVSCEDKLSIFSSSFCFSRLRQYGFTKYVLYF*(+)
MALQNTSCISDHEMCILQVTALDHQGKDRRSPLFQTS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021