Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA031581_circ_g.3 |
ID in PlantcircBase | osi_circ_002895 |
Alias | 10:18408720|18409636 |
Organism | Oryza sativa ssp. indica |
Position | chr10: 18408720-18409636 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA031581 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA031581_circ_g.1 BGIOSGA031581_circ_g.2 BGIOSGA031581_circ_g.4 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA031581-TA:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18409581-18408722(-) 18409210-18408729(+) 18409619-18408811(+) |
Potential amino acid sequence |
MESLSSQLTEARRAAKKAQKLLEPVSNRKKNRQLEDDGLVITKALYGNRKKVKESSESNELNDD VASQVLDVTIPLNFLVSEAGQLKLHEGIKKSGIMGFYDPCPGDPKLLLVEYTFHGQKYKTYFVK PYCLKREKQKELEKMESLSSQLTEARRAAKKAQKLLEPVSNRKKNRQLEDDGLVITKALYGNRK KVKESSESNELNDDVASQVLDVTIPLNFLVSEAGQLKLHEGIKKSGIMGFYDPCPGDPKLLLVE YTFHGQKYKTYFVKPYCLKREKQKELEKMESLSSQLTEARRAAKKAQKLLEPVSNRKKNRQLED DGLVITKALYGNRKKVKESSESNELNDDVASQVLDVTIPLNFLVSEAGQLKLHEGIKKSGIMGF YDPCPGDPKLLLVEYTFHGQKYKTYFVKPYCLKREKQKELEKMESLSSQLTEARRAAKKAQKLL EPVSNRKKNRQLEDDGLVITKALYGNRKKVKESSESNELNDDVASQVLDVTIPLNFLVSEAGQL KLHEGIKKSGIMGFYDPCPGDPKLLLVEYTFHGQKYK(-) MVTSNTCEATSSFNSFDSLLSLTFLRFPYRAFVITKPSSSSCLFFLRFETGSSNFCAFFAARLA SVSCEDKLSIFSSSFCFSRLRQYGFTKYVLYF*(+) MALQNTSCISDHEMCILQVTALDHQGKDRRSPLFQTS*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |