Plant Circular RNA Database

Detail information of AT1G08620_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT1G08620_circ_g.5
					
						ID in PlantcircBase
						ath_circ_001433
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 2740058-2742832  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							AT1G08620						
					
						Parent gene annotation
						
							Transcription factor jumonji (jmj) family protein / zinc finger 
(C5HC2 type) family protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G08620.3:4
AT1G08620.4:4
AT1G08620.1:4
AT1G08620.2:4

General Information
CircRNA Name	AT1G08620_circ_g.5
ID in PlantcircBase	ath_circ_001433
Alias	NA
Organism	Arabidpsis thaliana
Position	chr1: 2740058-2742832 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	AT1G08620
Parent gene annotation	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Parent gene strand	+
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G08620.3:4 AT1G08620.4:4 AT1G08620.1:4 AT1G08620.2:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCAGCACAAAGCTGGAAAATCAGATCTTCCTCCTTTGCAACCCTCTGGGAGTCCCGACGGTTTT
GAAATGTTTGGATATTCGTCACCCGCAATCGTACAGgttacacaactctccccgtcaaaactga
aaaccgcaggagtacctgtgcaccgttgcgtccagcatgctggagagtttgtcttgacttttcc
tcgggcat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1938
Transcript exons: 2740058-2740426,2740828-2742094,2742184-2742287,2742635-
2742832
GTTACACAACTCTCCCCGTCAAAACTGAAAACCGCAGGAGTACCTGTGCACCGTTGCGTCCAGC
ATGCTGGAGAGTTTGTCTTGACTTTTCCTCGGGCATATCATGCTGGATTTAATTCTGGTTTCAA
CTGTGCTGAAGCTGTGAATGTAGCACCCGTTGACTGGTTACCTCATGGGCAGATTGCCATAGAG
TTATACTGTCAACAGGGTAGAAAAACGTCCATCTCGCATGATAAATTGTTGCTTGGGGCAGCAA
GGGAAGTAGTGAAAGCCGACTGGGAGCTGAACTTACTAAGGAAAAATACTGTAGATAACTTAAG
GTGGAAAGCATTCAGTGCGAAGGATGGAATTTTGGCAAAAACATTAAAGGCACGCATTGACATG
GAACGTACGAGAAGAGAATTTCTGTGCAACTCTTCACTTGCATTGAAAATGCACAGTAATTTCG
ATGCTACCAACGAGAGAGAGTGCTGTATATGCTTCTTTGATTTGCACCTGTCTGCTGCTGGCTG
TCGTTGTTCCCCGGAGAAGTATTCATGTTTGACTCATGTGAAGGAGTTGTGTTCATGTCCATGG
GTTACTAAATATTTTCTATTTCGCTATGATATCGATGAACTGAATGTTCTTGTTGAGGCAGTGG
AAGGAAAACTGAGTTCTGTATATAGATGGGCGCGTCAAGATTTAGGATTGGCATTAAGTACAGA
CGTCTCAGGAAGCAAGATGGAGATAGATGAAGAAGGAAAAGTCCACAAGGACCCGACTCCACAA
ACAACTGCACTTTCAGGGAAGGATTTGCAGTTGAAAGTAACATCGAAAGAAGTAAGTAAAGAGT
TAGAAAAGACTAGTAAATTATCTCATGTTAATTTACTTCTGAAAGAAAAGGAGGAGCAAATAAC
GTCAAGTCACTGTATGAAGCCTGTCAAAGAAGAAACTGTTTGTGATTCTTCTGATCCAAACGTT
TCAGCTTGCCAACCATCTGAAGGAGGCATAATCTGTATGACAGCTGTTAAGTCCGCAAGTGGTA
AAAAGAATTCACAGAGTCTACCCAATGATGTGATACTCCTCAGCGATGATGAGTATGACATACC
TAGGAAACGAGGTTCTGTGAGAAGAGATGCAATTTCTTCTGGCAAGAAATTAGAAATACGAGAG
AGACCGACCCACGTTTTGGCGTTAGAAGCTTCTGCCAAAATTGCTGCTCCAATTTGCCAAAGGG
AAGGAGATTCGCTGCGTGATACACGAAACACTATATCATTGCCTACTAATGACCAAAAAACAAT
GAGAAGGGATGTACCGAGTTCTACTTCGCACGCGGAAGTTAATGCGGAGGCTACTGGGCTTACT
CAAGATATATGTAACAGAATGGCAACTAACAGCCACGGTGGTGGAAAACCTACTAGTTGTAAAT
CCAAAAACTCTGGAGGTTTGGCTATAGTGGATGTTGTGGATGGGACAAGAAGTAGTTCAGGTAC
ACCGTCTTGTTCGCAAAATAATAGTCCGGATAGGTTCATCCGCCAAAAGGGTCCCCGCATTGCA
AAGGTCGTGAGGAGAATCAATTGCAATGTAGAGCCTTTAAGTTATGGATGTGTGCTGTCTGGAA
AATCATGGTGCAGCCGGCGAGCAATTTTTCCTAAAGGATTTCGTAGCCGGGTTAAGTACATAAA
CATTTTGGATCCAACAAATATGTGCTTCTACATTTCAGAAATTCTGGATGCTGGACGCAACAGT
CCATTGTTCATGGTTTACTTGGAGAGTAATCCCAGTGAGGTGTTCGTTCATATGTCGCCTACAA
GATGCTGGGAGATGGTAAGAGAGAGAGTAAATCAAGAGATAACTAAGCAGCACAAAGCTGGAAA
ATCAGATCTTCCTCCTTTGCAACCCTCTGGGAGTCCCGACGGTTTTGAAATGTTTGGATATTCG
TCACCCGCAATCGTACAG
						
					

						Genomic sequence
						
							GTTACACAACTCTCCCCGTCAAAACTGAAAACCGCAGGAGTACCTGTGCACCGTTGCGTCCAGC
ATGCTGGAGAGTTTGTCTTGACTTTTCCTCGGGCATATCATGCTGGATTTAATTCTGGTTTCAA
CTGTGCTGAAGCTGTGAATGTAGCACCCGTTGACTGGTTACCTCATGGGCAGATTGCCATAGAG
TTATACTGTCAACAGGGTAGAAAAACGTCCATCTCGCATGATAAATTGTTGCTTGGGGCAGCAA
GGGAAGTAGTGAAAGCCGACTGGGAGCTGAACTTACTAAGGAAAAATACTGTAGATAACTTAAG
GTGGAAAGCATTCAGTGCGAAGGATGGAATTTTGGCAAAAACATTAAAGGTAAAGATTAGATAT
TCTTACTCTTGATTCTTGAAGTTTAGATGCCTATAAGTGTGAATGATTGGAAAATCCTGAACTC
ATGAATAACTTGAGAGGTATCTTTGCAAACTGGTACCACGGTGGTATCCGTTGTAAACTGGTAG
CATGAGGTTGTAATTGATATGGAACTTGAAATTCTCTTAAGTTGAGGGGTATTGCATATCACAC
GAATCTACAGCTAACTAACAAGGGAAGAACGGAAGATTACTACACCACCTCTTACTAGTTAAAA
CAAATGATTAGTTCAGGAGGTGTTCATCTTCTGCCTGGGTCTAACTGTACAAATAAATCTCGTA
GGTTTAAGAGGATCATTCTTTATTGTCAATATGGTGATTAATGGACTTGTCATGTTTTTTATTT
AGGCACGCATTGACATGGAACGTACGAGAAGAGAATTTCTGTGCAACTCTTCACTTGCATTGAA
AATGCACAGTAATTTCGATGCTACCAACGAGAGAGAGTGCTGTATATGCTTCTTTGATTTGCAC
CTGTCTGCTGCTGGCTGTCGTTGTTCCCCGGAGAAGTATTCATGTTTGACTCATGTGAAGGAGT
TGTGTTCATGTCCATGGGTTACTAAATATTTTCTATTTCGCTATGATATCGATGAACTGAATGT
TCTTGTTGAGGCAGTGGAAGGAAAACTGAGTTCTGTATATAGATGGGCGCGTCAAGATTTAGGA
TTGGCATTAAGTACAGACGTCTCAGGAAGCAAGATGGAGATAGATGAAGAAGGAAAAGTCCACA
AGGACCCGACTCCACAAACAACTGCACTTTCAGGGAAGGATTTGCAGTTGAAAGTAACATCGAA
AGAAGTAAGTAAAGAGTTAGAAAAGACTAGTAAATTATCTCATGTTAATTTACTTCTGAAAGAA
AAGGAGGAGCAAATAACGTCAAGTCACTGTATGAAGCCTGTCAAAGAAGAAACTGTTTGTGATT
CTTCTGATCCAAACGTTTCAGCTTGCCAACCATCTGAAGGAGGCATAATCTGTATGACAGCTGT
TAAGTCCGCAAGTGGTAAAAAGAATTCACAGAGTCTACCCAATGATGTGATACTCCTCAGCGAT
GATGAGTATGACATACCTAGGAAACGAGGTTCTGTGAGAAGAGATGCAATTTCTTCTGGCAAGA
AATTAGAAATACGAGAGAGACCGACCCACGTTTTGGCGTTAGAAGCTTCTGCCAAAATTGCTGC
TCCAATTTGCCAAAGGGAAGGAGATTCGCTGCGTGATACACGAAACACTATATCATTGCCTACT
AATGACCAAAAAACAATGAGAAGGGATGTACCGAGTTCTACTTCGCACGCGGAAGTTAATGCGG
AGGCTACTGGGCTTACTCAAGATATATGTAACAGAATGGCAACTAACAGCCACGGTGGTGGAAA
ACCTACTAGTTGTAAATCCAAAAACTCTGGAGGTTTGGCTATAGTGGATGTTGTGGATGGGACA
AGAAGTAGTTCAGGTACACCGTCTTGTTCGCAAAATAATAGTCCGGATAGGTTCATCCGCCAAA
AGGGTCCCCGCATTGCAAAGGTCGTGAGGAGAATCAATTGCAATGTAGAGCCTTTAAGTTATGG
ATGTGTGCTGTCTGGAAAATCATGGTGCAGCCGGCGAGCAATTTTTCCTAAAGGTGACATGTGG
TCAAGTATTTTTGCTACTTGAGAACATTAACAGTTATACATATTGCAAGTGCTTATTGTCTATT
CTTCTTTGGTGCAGGATTTCGTAGCCGGGTTAAGTACATAAACATTTTGGATCCAACAAATATG
TGCTTCTACATTTCAGAAATTCTGGATGCTGGACGCAACAGTCCATTGTTCATGGTTAGTTGGT
AGATAGATGCTGATCTAATTTAACTAACCTTAAAAATATGTCTGAGTAGTGTTTCATTTTCAAA
TTAAATATTGCCATATGAATAAATCCGATGACATGAATCTGAACCGGAAATATGATCCATTATT
TGGCTGTCAAAGACGTAGAGTCCCATCATGCTAACATAAACTTTAAAAGTTTTGAACTGAGTAT
GAAACCGGAATTAACCTATTAATCAACCTTTAAAATCTTGTGTGTGTGTGTAAAAAAAGGTTGT
TTTGTCTTGATTCTATTGGTCATTGTGCAGTTCCAAAAATCTTGCCCATCAACAAACTGTGTGG
TATGTTCTTTTTGTCAGGTTTACTTGGAGAGTAATCCCAGTGAGGTGTTCGTTCATATGTCGCC
TACAAGATGCTGGGAGATGGTAAGAGAGAGAGTAAATCAAGAGATAACTAAGCAGCACAAAGCT
GGAAAATCAGATCTTCCTCCTTTGCAACCCTCTGGGAGTCCCGACGGTTTTGAAATGTTTGGAT
ATTCGTCACCCGCAATCGTACAG
						
					

			
		

Sequences
Splice junction sequence	GCAGCACAAAGCTGGAAAATCAGATCTTCCTCCTTTGCAACCCTCTGGGAGTCCCGACGGTTTT GAAATGTTTGGATATTCGTCACCCGCAATCGTACAGgttacacaactctccccgtcaaaactga aaaccgcaggagtacctgtgcaccgttgcgtccagcatgctggagagtttgtcttgacttttcc tcgggcat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1938 Transcript exons: 2740058-2740426,2740828-2742094,2742184-2742287,2742635- 2742832 GTTACACAACTCTCCCCGTCAAAACTGAAAACCGCAGGAGTACCTGTGCACCGTTGCGTCCAGC ATGCTGGAGAGTTTGTCTTGACTTTTCCTCGGGCATATCATGCTGGATTTAATTCTGGTTTCAA CTGTGCTGAAGCTGTGAATGTAGCACCCGTTGACTGGTTACCTCATGGGCAGATTGCCATAGAG TTATACTGTCAACAGGGTAGAAAAACGTCCATCTCGCATGATAAATTGTTGCTTGGGGCAGCAA GGGAAGTAGTGAAAGCCGACTGGGAGCTGAACTTACTAAGGAAAAATACTGTAGATAACTTAAG GTGGAAAGCATTCAGTGCGAAGGATGGAATTTTGGCAAAAACATTAAAGGCACGCATTGACATG GAACGTACGAGAAGAGAATTTCTGTGCAACTCTTCACTTGCATTGAAAATGCACAGTAATTTCG ATGCTACCAACGAGAGAGAGTGCTGTATATGCTTCTTTGATTTGCACCTGTCTGCTGCTGGCTG TCGTTGTTCCCCGGAGAAGTATTCATGTTTGACTCATGTGAAGGAGTTGTGTTCATGTCCATGG GTTACTAAATATTTTCTATTTCGCTATGATATCGATGAACTGAATGTTCTTGTTGAGGCAGTGG AAGGAAAACTGAGTTCTGTATATAGATGGGCGCGTCAAGATTTAGGATTGGCATTAAGTACAGA CGTCTCAGGAAGCAAGATGGAGATAGATGAAGAAGGAAAAGTCCACAAGGACCCGACTCCACAA ACAACTGCACTTTCAGGGAAGGATTTGCAGTTGAAAGTAACATCGAAAGAAGTAAGTAAAGAGT TAGAAAAGACTAGTAAATTATCTCATGTTAATTTACTTCTGAAAGAAAAGGAGGAGCAAATAAC GTCAAGTCACTGTATGAAGCCTGTCAAAGAAGAAACTGTTTGTGATTCTTCTGATCCAAACGTT TCAGCTTGCCAACCATCTGAAGGAGGCATAATCTGTATGACAGCTGTTAAGTCCGCAAGTGGTA AAAAGAATTCACAGAGTCTACCCAATGATGTGATACTCCTCAGCGATGATGAGTATGACATACC TAGGAAACGAGGTTCTGTGAGAAGAGATGCAATTTCTTCTGGCAAGAAATTAGAAATACGAGAG AGACCGACCCACGTTTTGGCGTTAGAAGCTTCTGCCAAAATTGCTGCTCCAATTTGCCAAAGGG AAGGAGATTCGCTGCGTGATACACGAAACACTATATCATTGCCTACTAATGACCAAAAAACAAT GAGAAGGGATGTACCGAGTTCTACTTCGCACGCGGAAGTTAATGCGGAGGCTACTGGGCTTACT CAAGATATATGTAACAGAATGGCAACTAACAGCCACGGTGGTGGAAAACCTACTAGTTGTAAAT CCAAAAACTCTGGAGGTTTGGCTATAGTGGATGTTGTGGATGGGACAAGAAGTAGTTCAGGTAC ACCGTCTTGTTCGCAAAATAATAGTCCGGATAGGTTCATCCGCCAAAAGGGTCCCCGCATTGCA AAGGTCGTGAGGAGAATCAATTGCAATGTAGAGCCTTTAAGTTATGGATGTGTGCTGTCTGGAA AATCATGGTGCAGCCGGCGAGCAATTTTTCCTAAAGGATTTCGTAGCCGGGTTAAGTACATAAA CATTTTGGATCCAACAAATATGTGCTTCTACATTTCAGAAATTCTGGATGCTGGACGCAACAGT CCATTGTTCATGGTTTACTTGGAGAGTAATCCCAGTGAGGTGTTCGTTCATATGTCGCCTACAA GATGCTGGGAGATGGTAAGAGAGAGAGTAAATCAAGAGATAACTAAGCAGCACAAAGCTGGAAA ATCAGATCTTCCTCCTTTGCAACCCTCTGGGAGTCCCGACGGTTTTGAAATGTTTGGATATTCG TCACCCGCAATCGTACAG
Genomic sequence	GTTACACAACTCTCCCCGTCAAAACTGAAAACCGCAGGAGTACCTGTGCACCGTTGCGTCCAGC ATGCTGGAGAGTTTGTCTTGACTTTTCCTCGGGCATATCATGCTGGATTTAATTCTGGTTTCAA CTGTGCTGAAGCTGTGAATGTAGCACCCGTTGACTGGTTACCTCATGGGCAGATTGCCATAGAG TTATACTGTCAACAGGGTAGAAAAACGTCCATCTCGCATGATAAATTGTTGCTTGGGGCAGCAA GGGAAGTAGTGAAAGCCGACTGGGAGCTGAACTTACTAAGGAAAAATACTGTAGATAACTTAAG GTGGAAAGCATTCAGTGCGAAGGATGGAATTTTGGCAAAAACATTAAAGGTAAAGATTAGATAT TCTTACTCTTGATTCTTGAAGTTTAGATGCCTATAAGTGTGAATGATTGGAAAATCCTGAACTC ATGAATAACTTGAGAGGTATCTTTGCAAACTGGTACCACGGTGGTATCCGTTGTAAACTGGTAG CATGAGGTTGTAATTGATATGGAACTTGAAATTCTCTTAAGTTGAGGGGTATTGCATATCACAC GAATCTACAGCTAACTAACAAGGGAAGAACGGAAGATTACTACACCACCTCTTACTAGTTAAAA CAAATGATTAGTTCAGGAGGTGTTCATCTTCTGCCTGGGTCTAACTGTACAAATAAATCTCGTA GGTTTAAGAGGATCATTCTTTATTGTCAATATGGTGATTAATGGACTTGTCATGTTTTTTATTT AGGCACGCATTGACATGGAACGTACGAGAAGAGAATTTCTGTGCAACTCTTCACTTGCATTGAA AATGCACAGTAATTTCGATGCTACCAACGAGAGAGAGTGCTGTATATGCTTCTTTGATTTGCAC CTGTCTGCTGCTGGCTGTCGTTGTTCCCCGGAGAAGTATTCATGTTTGACTCATGTGAAGGAGT TGTGTTCATGTCCATGGGTTACTAAATATTTTCTATTTCGCTATGATATCGATGAACTGAATGT TCTTGTTGAGGCAGTGGAAGGAAAACTGAGTTCTGTATATAGATGGGCGCGTCAAGATTTAGGA TTGGCATTAAGTACAGACGTCTCAGGAAGCAAGATGGAGATAGATGAAGAAGGAAAAGTCCACA AGGACCCGACTCCACAAACAACTGCACTTTCAGGGAAGGATTTGCAGTTGAAAGTAACATCGAA AGAAGTAAGTAAAGAGTTAGAAAAGACTAGTAAATTATCTCATGTTAATTTACTTCTGAAAGAA AAGGAGGAGCAAATAACGTCAAGTCACTGTATGAAGCCTGTCAAAGAAGAAACTGTTTGTGATT CTTCTGATCCAAACGTTTCAGCTTGCCAACCATCTGAAGGAGGCATAATCTGTATGACAGCTGT TAAGTCCGCAAGTGGTAAAAAGAATTCACAGAGTCTACCCAATGATGTGATACTCCTCAGCGAT GATGAGTATGACATACCTAGGAAACGAGGTTCTGTGAGAAGAGATGCAATTTCTTCTGGCAAGA AATTAGAAATACGAGAGAGACCGACCCACGTTTTGGCGTTAGAAGCTTCTGCCAAAATTGCTGC TCCAATTTGCCAAAGGGAAGGAGATTCGCTGCGTGATACACGAAACACTATATCATTGCCTACT AATGACCAAAAAACAATGAGAAGGGATGTACCGAGTTCTACTTCGCACGCGGAAGTTAATGCGG AGGCTACTGGGCTTACTCAAGATATATGTAACAGAATGGCAACTAACAGCCACGGTGGTGGAAA ACCTACTAGTTGTAAATCCAAAAACTCTGGAGGTTTGGCTATAGTGGATGTTGTGGATGGGACA AGAAGTAGTTCAGGTACACCGTCTTGTTCGCAAAATAATAGTCCGGATAGGTTCATCCGCCAAA AGGGTCCCCGCATTGCAAAGGTCGTGAGGAGAATCAATTGCAATGTAGAGCCTTTAAGTTATGG ATGTGTGCTGTCTGGAAAATCATGGTGCAGCCGGCGAGCAATTTTTCCTAAAGGTGACATGTGG TCAAGTATTTTTGCTACTTGAGAACATTAACAGTTATACATATTGCAAGTGCTTATTGTCTATT CTTCTTTGGTGCAGGATTTCGTAGCCGGGTTAAGTACATAAACATTTTGGATCCAACAAATATG TGCTTCTACATTTCAGAAATTCTGGATGCTGGACGCAACAGTCCATTGTTCATGGTTAGTTGGT AGATAGATGCTGATCTAATTTAACTAACCTTAAAAATATGTCTGAGTAGTGTTTCATTTTCAAA TTAAATATTGCCATATGAATAAATCCGATGACATGAATCTGAACCGGAAATATGATCCATTATT TGGCTGTCAAAGACGTAGAGTCCCATCATGCTAACATAAACTTTAAAAGTTTTGAACTGAGTAT GAAACCGGAATTAACCTATTAATCAACCTTTAAAATCTTGTGTGTGTGTGTAAAAAAAGGTTGT TTTGTCTTGATTCTATTGGTCATTGTGCAGTTCCAAAAATCTTGCCCATCAACAAACTGTGTGG TATGTTCTTTTTGTCAGGTTTACTTGGAGAGTAATCCCAGTGAGGTGTTCGTTCATATGTCGCC TACAAGATGCTGGGAGATGGTAAGAGAGAGAGTAAATCAAGAGATAACTAAGCAGCACAAAGCT GGAAAATCAGATCTTCCTCCTTTGCAACCCTCTGGGAGTCCCGACGGTTTTGAAATGTTTGGAT ATTCGTCACCCGCAATCGTACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.181334604

Conservation Information
Conserved circRNAs	NA
PMCS	0.181334604

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							2740840-2742829(+)
						
					

						Potential amino acid sequence
						
							MERTRREFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRCSPEKYSCLTHVKELCSCP
WVTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVSGSKMEIDEEGKVHKDPTP
QTTALSGKDLQLKVTSKEVSKELEKTSKLSHVNLLLKEKEEQITSSHCMKPVKEETVCDSSDPN
VSACQPSEGGIICMTAVKSASGKKNSQSLPNDVILLSDDEYDIPRKRGSVRRDAISSGKKLEIR
ERPTHVLALEASAKIAAPICQREGDSLRDTRNTISLPTNDQKTMRRDVPSSTSHAEVNAEATGL
TQDICNRMATNSHGGGKPTSCKSKNSGGLAIVDVVDGTRSSSGTPSCSQNNSPDRFIRQKGPRI
AKVVRRINCNVEPLSYGCVLSGKSWCSRRAIFPKGFRSRVKYINILDPTNMCFYISEILDAGRN
SPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQHKAGKSDLPPLQPSGSPDGFEMFGY
SSPAIVQVTQLSPSKLKTAGVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLP
HGQIAIELYCQQGRKTSISHDKLLLGAAREVVKADWELNLLRKNTVDNLRWKAFSAKDGILAKT
LKARIDMERTRREFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRCSPEKYSCLTHVK
ELCSCPWVTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVSGSKMEIDEEGKV
HKDPTPQTTALSGKDLQLKVTSKEVSKELEKTSKLSHVNLLLKEKEEQITSSHCMKPVKEETVC
DSSDPNVSACQPSEGGIICMTAVKSASGKKNSQSLPNDVILLSDDEYDIPRKRGSVRRDAISSG
KKLEIRERPTHVLALEASAKIAAPICQREGDSLRDTRNTISLPTNDQKTMRRDVPSSTSHAEVN
AEATGLTQDICNRMATNSHGGGKPTSCKSKNSGGLAIVDVVDGTRSSSGTPSCSQNNSPDRFIR
QKGPRIAKVVRRINCNVEPLSYGCVLSGKSWCSRRAIFPKGFRSRVKYINILDPTNMCFYISEI
LDAGRNSPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQHKAGKSDLPPLQPSGSPDG
FEMFGYSSPAIVQVTQLSPSKLKTAGVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVA
PVDWLPHGQIAIELYCQQGRKTSISHDKLLLGAAREVVKADWELNLLRKNTVDNLRWKAFSAKD
GILAKTLKARIDMERTRREFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRCSPEKYS
CLTHVKELCSCPWVTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVSGSKMEI
DEEGKVHKDPTPQTTALSGKDLQLKVTSKEVSKELEKTSKLSHVNLLLKEKEEQITSSHCMKPV
KEETVCDSSDPNVSACQPSEGGIICMTAVKSASGKKNSQSLPNDVILLSDDEYDIPRKRGSVRR
DAISSGKKLEIRERPTHVLALEASAKIAAPICQREGDSLRDTRNTISLPTNDQKTMRRDVPSST
SHAEVNAEATGLTQDICNRMATNSHGGGKPTSCKSKNSGGLAIVDVVDGTRSSSGTPSCSQNNS
PDRFIRQKGPRIAKVVRRINCNVEPLSYGCVLSGKSWCSRRAIFPKGFRSRVKYINILDPTNMC
FYISEILDAGRNSPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQHKAGKSDLPPLQP
SGSPDGFEMFGYSSPAIVQVTQLSPSKLKTAGVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCA
EAVNVAPVDWLPHGQIAIELYCQQGRKTSISHDKLLLGAAREVVKADWELNLLRKNTVDNLRWK
AFSAKDGILAKTLKARIDMERTRREFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRC
SPEKYSCLTHVKELCSCPWVTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVS
GSKMEIDEEGKVHKDPTPQTTALSGKDLQLKVTSKEVSKELEKTSKLSHVNLLLKEKEEQITSS
HCMKPVKEETVCDSSDPNVSACQPSEGGIICMTAVKSASGKKNSQSLPNDVILLSDDEYDIPRK
RGSVRRDAISSGKKLEIRERPTHVLALEASAKIAAPICQREGDSLRDTRNTISLPTNDQKTMRR
DVPSSTSHAEVNAEATGLTQDICNRMATNSHGGGKPTSCKSKNSGGLAIVDVVDGTRSSSGTPS
CSQNNSPDRFIRQKGPRIAKVVRRINCNVEPLSYGCVLSGKSWCSRRAIFPKGFRSRVKYINIL
DPTNMCFYISEILDAGRNSPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQHKAGKSD
LPPLQPSGSPDGFEMFGYSSPAIVQ(+)
						
					

						Sponge-miRNAs
						
							ath-miR399c-3p 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	2740840-2742829(+)
Potential amino acid sequence	MERTRREFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRCSPEKYSCLTHVKELCSCP WVTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVSGSKMEIDEEGKVHKDPTP QTTALSGKDLQLKVTSKEVSKELEKTSKLSHVNLLLKEKEEQITSSHCMKPVKEETVCDSSDPN VSACQPSEGGIICMTAVKSASGKKNSQSLPNDVILLSDDEYDIPRKRGSVRRDAISSGKKLEIR ERPTHVLALEASAKIAAPICQREGDSLRDTRNTISLPTNDQKTMRRDVPSSTSHAEVNAEATGL TQDICNRMATNSHGGGKPTSCKSKNSGGLAIVDVVDGTRSSSGTPSCSQNNSPDRFIRQKGPRI AKVVRRINCNVEPLSYGCVLSGKSWCSRRAIFPKGFRSRVKYINILDPTNMCFYISEILDAGRN SPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQHKAGKSDLPPLQPSGSPDGFEMFGY SSPAIVQVTQLSPSKLKTAGVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLP HGQIAIELYCQQGRKTSISHDKLLLGAAREVVKADWELNLLRKNTVDNLRWKAFSAKDGILAKT LKARIDMERTRREFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRCSPEKYSCLTHVK ELCSCPWVTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVSGSKMEIDEEGKV HKDPTPQTTALSGKDLQLKVTSKEVSKELEKTSKLSHVNLLLKEKEEQITSSHCMKPVKEETVC DSSDPNVSACQPSEGGIICMTAVKSASGKKNSQSLPNDVILLSDDEYDIPRKRGSVRRDAISSG KKLEIRERPTHVLALEASAKIAAPICQREGDSLRDTRNTISLPTNDQKTMRRDVPSSTSHAEVN AEATGLTQDICNRMATNSHGGGKPTSCKSKNSGGLAIVDVVDGTRSSSGTPSCSQNNSPDRFIR QKGPRIAKVVRRINCNVEPLSYGCVLSGKSWCSRRAIFPKGFRSRVKYINILDPTNMCFYISEI LDAGRNSPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQHKAGKSDLPPLQPSGSPDG FEMFGYSSPAIVQVTQLSPSKLKTAGVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVA PVDWLPHGQIAIELYCQQGRKTSISHDKLLLGAAREVVKADWELNLLRKNTVDNLRWKAFSAKD GILAKTLKARIDMERTRREFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRCSPEKYS CLTHVKELCSCPWVTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVSGSKMEI DEEGKVHKDPTPQTTALSGKDLQLKVTSKEVSKELEKTSKLSHVNLLLKEKEEQITSSHCMKPV KEETVCDSSDPNVSACQPSEGGIICMTAVKSASGKKNSQSLPNDVILLSDDEYDIPRKRGSVRR DAISSGKKLEIRERPTHVLALEASAKIAAPICQREGDSLRDTRNTISLPTNDQKTMRRDVPSST SHAEVNAEATGLTQDICNRMATNSHGGGKPTSCKSKNSGGLAIVDVVDGTRSSSGTPSCSQNNS PDRFIRQKGPRIAKVVRRINCNVEPLSYGCVLSGKSWCSRRAIFPKGFRSRVKYINILDPTNMC FYISEILDAGRNSPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQHKAGKSDLPPLQP SGSPDGFEMFGYSSPAIVQVTQLSPSKLKTAGVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCA EAVNVAPVDWLPHGQIAIELYCQQGRKTSISHDKLLLGAAREVVKADWELNLLRKNTVDNLRWK AFSAKDGILAKTLKARIDMERTRREFLCNSSLALKMHSNFDATNERECCICFFDLHLSAAGCRC SPEKYSCLTHVKELCSCPWVTKYFLFRYDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVS GSKMEIDEEGKVHKDPTPQTTALSGKDLQLKVTSKEVSKELEKTSKLSHVNLLLKEKEEQITSS HCMKPVKEETVCDSSDPNVSACQPSEGGIICMTAVKSASGKKNSQSLPNDVILLSDDEYDIPRK RGSVRRDAISSGKKLEIRERPTHVLALEASAKIAAPICQREGDSLRDTRNTISLPTNDQKTMRR DVPSSTSHAEVNAEATGLTQDICNRMATNSHGGGKPTSCKSKNSGGLAIVDVVDGTRSSSGTPS CSQNNSPDRFIRQKGPRIAKVVRRINCNVEPLSYGCVLSGKSWCSRRAIFPKGFRSRVKYINIL DPTNMCFYISEILDAGRNSPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQHKAGKSD LPPLQPSGSPDGFEMFGYSSPAIVQ(+)
Sponge-miRNAs	ath-miR399c-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT1G08620_circ_g.5

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