Detail information of Os11g0137000_circ_g.2


General Information
CircRNA Name Os11g0137000_circ_g.2
ID in PlantcircBase osa_circ_008394
Alias NA
Organism Oryza sativa
Position chr11: 1703132-1703835  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0137000
Parent gene annotation Similar to PIN1-like auxin transport protein. (Os11t0137000-01)
Parent gene strand -
Alternative splicing Os11g0137000_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0137050-00:2
Os11t0137050-00:2
Os11t0137000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCCGGAGCTGCGCCGTCGAGTTGGACCCCAGCTTGGACAGCGTCGGCCCGTCCTTCTCGTTCT
TGTTCCCGAAACTGTACTCATCATAGGCCTGAGCTCctgaacaatggcaatgtgcagaagcacc
ccgcgaagtccgacggcgatggaggcggcagccatgacggccggacccacgaggaacctgacgg
ccatggca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 494
Transcript exons: 1703132-1703289,1703390-1703475,1703586-1703835
CTGAACAATGGCAATGTGCAGAAGCACCCCGCGAAGTCCGACGGCGATGGAGGCGGCAGCCATG
ACGGCCGGACCCACGAGGAACCTGACGGCCATGGCATACGAAGCAAGGGAGTTCCCACAGGCAA
TGATCCGTGGCTGCAATGCCATGAACAATCCTAGGCTGAACATGGCCATTCCAAGCCCTGCATC
TGACAGGATCGAAATCGACCGGGCGATGATGGCTGGCATCTCAATCCCCCACCTGTAGGAGACG
AGGGACCAGATGACACCAAGGAGGCTGGAGTAAGTGTTGGGGTTCCTGATCAGCTTCCTCCAAA
CCATGATCAGGATGAGCCTCGTCATCACGCTCGCCGGCGGCATCGCCGCCGCCATCCCCTCGCC
GTCGTCCTTTGGCCGGAGCTGCGCCGTCGAGTTGGACCCCAGCTTGGACAGCGTCGGCCCGTCC
TTCTCGTTCTTGTTCCCGAAACTGTACTCATCATAGGCCTGAGCTC

Genomic sequence CTGAACAATGGCAATGTGCAGAAGCACCCCGCGAAGTCCGACGGCGATGGAGGCGGCAGCCATG
ACGGCCGGACCCACGAGGAACCTGACGGCCATGGCATACGAAGCAAGGGAGTTCCCACAGGCAA
TGATCCGTGGCTGCAATGCCATGAACAATCCTGCAAAAACCAAAACACAATTCAGTTATTTGCA
GTCCTACATGGAACGCATGTAAAATTACAGCAATTTATCATATGTATCAGAGATGAACAAACAA
ACCTAGGCTGAACATGGCCATTCCAAGCCCTGCATCTGACAGGATCGAAATCGACCGGGCGATG
ATGGCTGGCATCTCAATCCCCCACCTGAATTACATCACATTGTTCACAAGATCAACAAACATGC
AGCAAACAGAGATGGCTAATGATGAACATGTCAATGTGAAAATTGTGAGTAAAATGTTTGCTTA
ATTAACCTGTAGGAGACGAGGGACCAGATGACACCAAGGAGGCTGGAGTAAGTGTTGGGGTTCC
TGATCAGCTTCCTCCAAACCATGATCAGGATGAGCCTCGTCATCACGCTCGCCGGCGGCATCGC
CGCCGCCATCCCCTCGCCGTCGTCCTTTGGCCGGAGCTGCGCCGTCGAGTTGGACCCCAGCTTG
GACAGCGTCGGCCCGTCCTTCTCGTTCTTGTTCCCGAAACTGTACTCATCATAGGCCTGAGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.340796733
Functional Information
Coding potential Y
Potential coding position 1703234-1703822(-)
1703718-1703688(-)
Potential amino acid sequence MPWPSGSSWVRPSWLPPPSPSDFAGCFCTLPLFRSSGL*(-)
MAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAG
LGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQELR
PMMSTVSGTRTRRTGRRCPSWGPTRRRSSGQRTTARGWRRRCRRRA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017