Detail information of AT1G78050_circ_g.2


General Information
CircRNA Name AT1G78050_circ_g.2
ID in PlantcircBase ath_circ_010721
Alias NA
Organism Arabidpsis thaliana
Position chr1: 29348919-29349038  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT1G78050
Parent gene annotation Phosphoglycerate/bisphosphoglycerate mutase
Parent gene strand +
Alternative splicing AT1G78050_circ_g.3
Support reads 2
Tissues aerial
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered AT1G78050.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTCACGAATGGCGCAGGAGTTACGAAATTCCTCCTCCGAAAGGCGAGAGCTTGGAGATgtat
ggagagttgcagggtttgaacaagaaagaaacagcggaaagatacgggacacaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGGAGAGTTGCAGGGTTTGAACAAGAAAGAAACAGCGGAAAGATACGGGACACAACAAGTT
CACGAATGGCGCAGGAGTTACGAAATTCCTCCTCCGAAAGGCGAGAGCTTGGAGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.097222225
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017