Detail information of AT3G12980_circ_g.5


General Information
CircRNA Name AT3G12980_circ_g.5
ID in PlantcircBase ath_circ_021333
Alias Ath_circ_FC1947
Organism Arabidpsis thaliana
Position chr3: 4151608-4154273  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT3G12980
Parent gene annotation Histone acetyltransferase HAC5
Parent gene strand +
Alternative splicing AT3G12980_circ_g.4 AT3G12980_circ_g.6
Support reads 3
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G12980.1:8
AT3G12980.2:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAGACCAGAGGTTGCATCGCTTGTAAGAAAATGTGGTCCCTCTTCCGATTGCACTCCCGAAA
CTGCAGAGATCCCCAATGCAAAGTCCCCAAATGCAGgtcccgggagccgactcgcttgtaatca
gagttgtagcatctgtcgacaaaatattagaagtaaagccacgtttccttgacattttccgtga
agataatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1592
Transcript exons: 4151608-4151736,4151852-4152052,4152141-4152283,4152375-
4152687,4152819-4152958,4153284-4153362,4153449-4153835,
4154074-4154273
GTCCCGGGAGCCGACTCGCTTGTAATCAGAGTTGTAGCATCTGTCGACAAAATATTAGAAGTAA
AGCCACGTTTCCTTGACATTTTCCGTGAAGATAATTATTCATCAGAATTCCCTTATAAGTCTAA
GGCCATTCTGTTGTTTCAGAAGATTGAAGGTGTTGAAGTATGCTTATTTGGCATGTATGTCCAG
GAATTTGGAACAGATTCTGCGTCTCCCAATCAGCGCCGGGTTTACCTTTCCTATCTGGACTCAG
TTAAGTACTTCAGACCTGACGTTAGAACAGTATCTGGAGAGGCCCTCCGTACGTTCGTATACCA
TGAAATTCTGATTGGTTACCTTGACTACTGTAAGAAACGTGGATTTTCAAGCTGCTATATATGG
GCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGC
CAAAGACTGATAAACTAAGGGAATGGTATCTAGCAATGCTAAAGAAAGCTTCCAAGGAAAAGGT
GGTCGTTGAGTGTACAAACTTCTATGATCACTTTTTCGTCCAGTCTGGTGAATGTAGAGCTAAG
GTAACAGCAGCAAGGTTACCATATTTTGATGGCGACTACTGGCCAGGTGCTGCTGAGGATTTAA
TAGATCAAATGAGCCAAGAGGAGGATGGCAAAAAGTCAAATAGAAAACTAATGCCCAAAAAGGT
CATATCGAAAAGGGCTCTAAAAGCAGTAGGTCAGTTGGACCTTTCTGTTAATGCCTCGAAGGAT
CTCCTGCTAATGCATAAACTGGGTGAGATCATCCTCCCAATGAAGGAAGATTTCATCATGGTTC
ATTTGCAACATTGTTGTAAGCATTGTTGTACTCTCATGGTATCTGGAAATCGTTGGGTGTGTAA
CCAGTGTAAGAATTTTCAGATTTGTGACAAGTGTCATGAAGTGGAAGAGAACCGTGTGGAAAAG
GAAAAGCATCCCGTCAATCAGAAGGAGAAGCATGTATTATATCCTGTTGCCATTGACAACATTC
CTACTGAAATTAAGGACAATGATGACATCCTCGAGAGCGAGTTCTTTGATACTAGGCAAGCTTT
CCTGAGTCTTTGCCAAGGTAATCACTATCAGTACGACACACTAAGACGGGCAAAACATTCTTCC
ATGATGATTCTCTATCATCTTCACAACCCAACCGTCCCTGCATTTGCAATGGCATGCGCCATCT
GCCAGCAAGAACTTGAAACTGCTCAAGGTTGGCGTTGCGAAGTTTGCCCTGACTATGATGTTTG
CAATGCTTGCTACTCAAAAGGCATCAACCATCCACATAGCATCATTAGCCGTCCATCTGCGACA
GATTCTGTTGTACAGAACACACAAACTAATCAAATTCAGAATGCCCAGTTAAGAGAGGTGCTGC
TACACGTAATGACATGCTGCACTGCACAGTGCCAGTATCCAAGGTGTCGCGTGATTAAGGGTCT
CATTAGGCATGGTCTTGTCTGCAAGACCAGAGGTTGCATCGCTTGTAAGAAAATGTGGTCCCTC
TTCCGATTGCACTCCCGAAACTGCAGAGATCCCCAATGCAAAGTCCCCAAATGCAG

Genomic sequence GTCCCGGGAGCCGACTCGCTTGTAATCAGAGTTGTAGCATCTGTCGACAAAATATTAGAAGTAA
AGCCACGTTTCCTTGACATTTTCCGTGAAGATAATTATTCATCAGAATTCCCTTATAAGTCTAA
GGTACAGATTGTGTATGCTTGGTTCTTATTTCTTTTCCTTCTTTTTGTTTTCTAATTATGACCT
TCTGCTACATGATGCCTGTTGACTATCAACTTCCATACTCATTTTTTTTCAGGCCATTCTGTTG
TTTCAGAAGATTGAAGGTGTTGAAGTATGCTTATTTGGCATGTATGTCCAGGAATTTGGAACAG
ATTCTGCGTCTCCCAATCAGCGCCGGGTTTACCTTTCCTATCTGGACTCAGTTAAGTACTTCAG
ACCTGACGTTAGAACAGTATCTGGAGAGGCCCTCCGTACGTTCGTATACCATGAAATTCTGGTA
AGCCGCATTTCTTCTGATCCTAGTTGCTTTCAGGCACCTGTGTTGCTTCACAAGTCTTATCAAC
AATGGGCTTTTCGGATTGCAGATTGGTTACCTTGACTACTGTAAGAAACGTGGATTTTCAAGCT
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAAT
TCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGGTATGGAATATATACTTTCCTGTAATAC
TTGTTTTTCACGTGTAAGAGAGAATATTGCATATAATGATGCATAATACTCCTTCCTTTTCAGG
TATCTAGCAATGCTAAAGAAAGCTTCCAAGGAAAAGGTGGTCGTTGAGTGTACAAACTTCTATG
ATCACTTTTTCGTCCAGTCTGGTGAATGTAGAGCTAAGGTAACAGCAGCAAGGTTACCATATTT
TGATGGCGACTACTGGCCAGGTGCTGCTGAGGATTTAATAGATCAAATGAGCCAAGAGGAGGAT
GGCAAAAAGTCAAATAGAAAACTAATGCCCAAAAAGGTCATATCGAAAAGGGCTCTAAAAGCAG
TAGGTCAGTTGGACCTTTCTGTTAATGCCTCGAAGGATCTCCTGCTAATGCATAAAGTAACTTC
TTTACCTTTAAGTTTTCCCTTTATTCGTTAACTTTGTTTCACTGATACTCTTACCTAATCTTCA
TGCCTTTGTTGAAGAAAGTGATATTATCAACCCCCTAACTTTTGATTGTTACTCTGTAGCTGGG
TGAGATCATCCTCCCAATGAAGGAAGATTTCATCATGGTTCATTTGCAACATTGTTGTAAGCAT
TGTTGTACTCTCATGGTATCTGGAAATCGTTGGGTGTGTAACCAGTGTAAGAATTTTCAGATTT
GTGACAAGTAAGTTTTACTTATCGGCTCGCTTTGTTTATTTGATACTTGTATAGTTTAATTAAA
TCAACTATATTGGGATGCGATATAAATTCAGAATTTCCCATAGACTGTTAAAATATCCAGCAAA
CAGATTTTTCTTCACTTAACTAAATAGCAGTATTCTAGTACGTTTGCGGGAGGGACTGTCTAGT
TTTCAAATGGGAGCTAGACAATGTTAGCTTTTAAGCACTTGGTGTATTCTGATTTTTTTTTTAG
GTTAGATTGACAGGTGTGCCTGTGAAGTATATATACATTTTTTGGCTGTATCTCTCAAGCTTTT
CGTTTACCACAGGTGTCATGAAGTGGAAGAGAACCGTGTGGAAAAGGAAAAGCATCCCGTCAAT
CAGAAGGAGAAGCATGTATTATATCCTGTAAGTTTCTACCGCGATAGGGCTCTAAAGTTTTTTG
TTTTCCCTCCTTGTTGGGTTGGAAAATGACAAGGTTTTGGTCTCTGCAGGTTGCCATTGACAAC
ATTCCTACTGAAATTAAGGACAATGATGACATCCTCGAGAGCGAGTTCTTTGATACTAGGCAAG
CTTTCCTGAGTCTTTGCCAAGGTAATCACTATCAGTACGACACACTAAGACGGGCAAAACATTC
TTCCATGATGATTCTCTATCATCTTCACAACCCAACCGTCCCTGCATTTGCAATGGCATGCGCC
ATCTGCCAGCAAGAACTTGAAACTGCTCAAGGTTGGCGTTGCGAAGTTTGCCCTGACTATGATG
TTTGCAATGCTTGCTACTCAAAAGGCATCAACCATCCACATAGCATCATTAGCCGTCCATCTGC
GACAGATTCTGTTGTACAGAACACACAAACTAATCAAATTCAGAATGCCCAGGTATTCCTTTTC
TTTCAATTTTTTAGCTTTGATCATAGAATTGATGTCCATATGCATACATAATTATTCACTTGTC
AAAGCTGGAAAGATAGATAGGCTCAACTCCTTTTAGGATTTTTACCAAAATTCCTTTCAAATAT
TGTGTAGCTAGATAAGTGTCGGTTAGAAAATTGAGTTTGCATCTCTTGGCTTCTCTTTTCCTTA
TTGCTAACTACGGTTTGGCTTGTTGGTACTGCAGTTAAGAGAGGTGCTGCTACACGTAATGACA
TGCTGCACTGCACAGTGCCAGTATCCAAGGTGTCGCGTGATTAAGGGTCTCATTAGGCATGGTC
TTGTCTGCAAGACCAGAGGTTGCATCGCTTGTAAGAAAATGTGGTCCCTCTTCCGATTGCACTC
CCGAAACTGCAGAGATCCCCAATGCAAAGTCCCCAAATGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.219804628
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a