Detail information of BGIOSGA003247_circ_igg.1


General Information
CircRNA Name BGIOSGA003247_circ_igg.1
ID in PlantcircBase osi_circ_008908
Alias Chr01:9459940_9467487(ZS97RS2), Chr01:9680545_9688083(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10446784-10451603  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003245_circ_ag.1 BGIOSGA003247_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCAACTCCGGCTTTGAGATCGCCTACGACCTCGCCGCCGGCGGCGCCGCCGCCGTCTCCATC
GCCGTGCGCGGCGAGGTGCACCTGGTGAGCCGGGAGttgaggaggagtggattgtttttgcttt
tgatgaggaggggatttgttcatgtttatgaggaggggatttttgggatctcgtttttttggat
gactagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAGGAGGAGTGGATTGTTTTTGCTTTTGATGAGGAGGGGATTTGTTCATGTTTATGAGGAGG
GGATTTTTGGGATCTCGTTTTTTTGGATGACTAGTAGTATTTTGTGTGTGCTTATGTTTTTTAC
TTTGGAGATTGTGTTATTTGGCTTTCATCAACGATGTGATGTTGTTCATGTGTGATTAGATCAT
GTTGTTTTATTTTCTCATGTTGTGCAGGGTCGTGTTCTCTTAGGTGTTTGAAGCTTCGATTTGG
TGGATTCAGTTAAGGTTAGTTATTTGTCTGAACTTGATGTGGTGTAGATCTGAAAATGAATGTA
CTAAATTATGTAGAACACTATGTGTGATCTGAAGTTGTTTTTAACTGGATTTAATAGAGTTTGA
TTTCTCATGTAGATCTGTTTACCAATGCCCTAGACTGATTTACTTTTGTTTTGGTTTTTTGTTT
GGATGCTCAGATCTGTAGTTTTGCAGATATATAGTTTGAATCTAAGAATGATTTGTGTGATCCT
AAGTGAGTGTGGTTATATGATTTGTGTTCATTGGAAGCACCATAAGACATAGCTGTACCGAATT
TTTAATTCACCTTGGATGAAGTGTCTGTGTGTGCACTGATGAAAGTTCATCCTCACTTTCCTCC
GTGACATCAGTTGTCACTTAAATTGATGATTTAATGTCTTTCTGTTTTGGATTGGAACCTTTTG
TCATCTCAAGTGGAGCTGGCATTATATCTCTGCTAAACATGCTTAATGAAATGATGGGTTGATA
TGTGGTTGCACCTCTTTTTATTAGTTAACTATAAACTATAAGCTCACATTCATGCATGTACCAT
GATTCAGGAAATGACAAAGACAAATGATAATTAAATGAAATGATTTAATCTGTAGTAGTTTTAT
TTTGAAGTTAATTTAAGTTTTTTCATTACTTCAATCTGTTCTAACTGTATTTCTTCTATTCTAT
TTAGGTTTCATTTGTAATATTTGATCAATAGTATATACTATTTCATTTCCTATGTTTGTTGAGT
CCTTACAGTGTTTATTTTGGGGGGGGGGGGCTGTGTGAGTGTGACAGTTTATCTAGCTATATAA
GGTTCATGTAATGCATTTGGTGCTATCCTCCAGCAATGCACTTAATAACATAGTTTCATCTTTT
TCAGTAACTGAAAACATTATTCTATATACAGACTTTTTTTTTTCTGGGGATTAATGTTTGAACA
ATTATGTTACATAGGTTACTTTTGTCCAAGTACTTTTGCAGTCTTCTTGTTATATGTAATTTGA
TTACTTTAGCATTATTTAAAATATTTGCTCCTGCTTTTGTTTGCTATTCCCATTGTGTAATCAC
ATTTCTTTTTTTTAATAGATGGTTCACACAAAGGATAGTGATGAAATTTTTGTTGATTCTATTT
CTTCTGATTCTAAAAGTTCTGAAAATGATGATGTTATTTCTGATAGTGAAGTGAGTATTTCTGT
CTTATTTTTTTTTCCTTTTTTTATACAATGAAGCAAGAGACTTATATGTTTTTTTATTGTGTTT
TCTAATTACATGATTAATTTTCACTATTTTTTTAGGACTCTAAAACTAGTTGTGATGAGATATC
AAAAGAGGAGCTATTGCGATCTTTGAAGCTGAAGTTGAATAAAAAGAAAGTATCTGTTGACTGC
AATTTGAAGGTTACTTTTTTTTGTTATGTTCAATTTTAATTATTATTTTTACAGCTTTCTCATT
TTTTGTATTCACTTGGTAAATACATTTCCGGTTTTTTTTAAAAAAATTCCCTATTCTTGAGCAG
AGAAAAAGATCTGAAACAACATAAGTTGATTTCAAAAATCAGTTGGATTCAGCATTACTTGAAA
TTTTTAGAGACAATGTTTTAATTGGTATGAAACGAAAACTCCACTGCCATAAAAGCAAGGTAAA
TGCAATATATCGAAGCAAGAAATTGAAGATGTGCACTGCCCGTCCATAAATTGTTCTTTTATGC
AATTTTTTTTATTTTTCCAATTTTCTTTTTTTGCAGAAAAAATCTGTCATGACTGATGCAACAG
AAGAAACTAAATTAACAAGATTCTCTGTGAAGTACTTTTCTGAAGTTCTGGAAAAATTGTCTAA
ACGTCATAGAGATATCATTTCCAAATCTTGTTTCAAAACCCTTTTGCTGTTTGAGAAATGTTCT
GTGCCATATAGACTTGCTTTATGGATTGCCCAAAAAGTTGATGTCAATTCTTGTGACATCATTG
TTCAAGACAAAGTAATTCCACTTTCAAAAGAATCTGTTCATATAGTTTTAGGTCTTCCTGTTGG
AGGTTTACCTATCAGTTCCAATTATGAAATTGGCAAGCAGAAAATTCTTGACACTTTTGGTCTC
TCTTCTTTGCCTACTGTCAATTTTTTTGGAGATAAGCTGATAAGGAACGAATTAATGTCTGATG
ATCAAGTGTTGATATCCTTCATGATGGTTTCTTCGAATTGTTTTCTTTGCCCAAACTCATCCCT
TCAACCTAGCACAAAATATCTCAGTGCTTTTGCGGATCTTACTTCTATTGATAAATTGGATTGG
AGCAATCTTGTTTTTGAATGGTTGATGAAACATCTTAGCAAGCTTGAGAAGTCCAAAAGTTTTG
GTGGTTGTCTGTACTACCTTGTGGTTAGTATTATTACTCTATCTTTTTTTCAATTGCTTTGCTT
TTTGTAACCATTTAACTTTATATTTTTGCTTTTTCTTATTAATAGGTCAATTACCTGGATTTTC
TTAACTTTGGTATGCGAAAAGTGTTGCAAGATACTCCAAGAATCAAAGTATGGAAAGGAACAAT
GATCAAAAAATTTTCAAAGTTTGATAAAATAAGCAAAGGAGTCTATGGCAAAAGACCGATAAAA
GATTTTTCTGAGAGCTGTTACAAAATGGTAATTTTATACCTACTTTTTTAGTTCTGAACTTGCT
TTCTTTTAAATTGTTTACTCTTTAGTTCTATCATTTTTTTGTAGATTGAAACTGGTACTGCCAA
AGCAACTTTTCTTCAAAGGCTTGATTCTGCAATTGGTGTTGACTTACCTCAAGAAATCAAAAAA
GACATAAATGAGTTGCTTCTGCACCATTTGGGTCCTGATGAAAATTGCATCGATGATAGAGTGA
AGAATCTTATGATTGATATATTTGTTCTTTTATCTAATGCTAGCAAGCTAAGTGTTCCTGATAA
TACTGGTTAGTGTACATTTAATCTCTTCATTACTGTCATCTTCATTAGTGTACGAATATTAGTT
CACATTATCACGAGTAAAAATTTTACTCGCAAGTTTACTCATGGTGACGTGTACGAATATTATA
TGCCTATTTTTCAATCCAACAGTATATAAGCCGCCTTCCCCGCACCAAGTGCATCCACCCCAGA
TCTCATTGCTTCGCTCCACGACGAGCTCTGCAAAGGCAGCGGCAATTGTGATTAAGGGGGTAAA
TCGTCTGGTTTAGAGAATTCAGGGGTATAGAATGTGTGATATTAAAATTTAAGAGGGGAGTGGG
GTGGTAATTTAAACTTTTTCTAAAAATAAGCATAGCTTATTTTTTTTATACTTGGATTAAAATT
TTAAATAAAACATATTATAAAAATAATGCAGAAGAGTAAACAGCATTACACATTTAAAATCGTA
CGAAGGAAGTAAACATTTTGTAAGATACGTGGCACCATCCCCGCAAAAAAAAAACGTGGCACCA
TGCATTACCACCCACACTGAACTATGCATATGCAGTGAACACACGGCCGGCCGGCACACCGGTA
CAGACCAGTAGGCCTAGGGTATGTTTAGTTCACGCTAAAATTAAAAGTTTAATTGAAATTGAAA
TGATGTGACGAAAAAATTAGAAGTTTATGTATGTAAAAATGTTTTGATGTAATGAAAAAGTTAG
AAGTTTGAAGAAAAAGTTAGAACTAAACAAGTCCTTGGCCTAGTAGTACAACGCAGCTCACAGC
CACAGAAAAATTTTAAAAAAGAAAAACAGCTCCGCAGCCTGACATGTAGGGCCCACCCCTCCAA
CGCGACTCCCTTATAAGCCGCCACCCCCACACCAAATGCATCCAACCCCGTTCACTTCGATTCG
CTCCACGCGCGCGACGATCGACGAGCTCTGCTCTGCAAAGGCGGCGGCAATGGCGGTGGCGGCG
AAGGGTGAGGAGATGACACCGGAGCACGAGGAGGAGGTGATCATCGTGGGCGCCGGGCAGTCCG
GGCTGGCCGCGGCGGCGTGCCTGTCGGTGCGCGGCGTGGCGAGCTGCCTCGTCCTGGAGCGCGA
CGACTGCGTGGCGTCGCTGTGGCGCCACCGCGCCTACGACCGCCTCCGCCTCCACCTCCCCAAG
CGCCACTGCGCGCTGCCGCGCGCGCCGCACGCCGCCGCCGCGCCCGACTACCTCCCCCGCGACG
ACTTCGCCGCCTACCTCGACGCCTACGCCTCCCGCTTCGGCGTCCGCACCCGCCTCCGCCGCGA
GGTCCGCTCGGCGCGCCACGACGCCGCCCGCGCCAGGTGGCTCGTCGACGCCGTCGACCTCGCC
ACGGGGAAGGCGGAGCGGTACGCGGCGAGGCACCTCGTCGCCGCCGCGGGCGAGAACGACGAGA
GGGTGGTGCCCGAGGTGCCCGGCATGGACACGTTCCCCGGCAAGGTCGTCCACTCCGCCGACTA
CCGCTCGGCCGGCGCGTTCAAGGGGAGGTCCGTGCTCGTCGTCGGCTGCGGCAACTCCGGCTTT
GAGATCGCCTACGACCTCGCCGCCGGCGGCGCCGCCGCCGTCTCCATCGCCGTGCGCGGCGAGG
TGCACCTGGTGAGCCGGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021