Detail information of BGIOSGA016636_circ_g.2


General Information
CircRNA Name BGIOSGA016636_circ_g.2
ID in PlantcircBase osi_circ_005567
Alias 4:22734801|22735310
Organism Oryza sativa ssp. indica
Position chr4: 22734801-22735310  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016636
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016636-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGTAACAGGTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAA
GCTTGTGTCTTGGTATGACAACGAATGGGGATACAGgctgtcggcaaggtgcttcctgctctca
atggaaagttgactggtatggctttccgtgttccaaccgtggatgtctctgtcgttgatttgac
tgtcaggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGTCGGCAAGGTGCTTCCTGCTCTCAATGGAAAGTTGACTGGTATGGCTTTCCGTGTTCCAA
CCGTGGATGTCTCTGTCGTTGATTTGACTGTCAGGCTTGAGAAGCCAGCATCCTATGATCAGAT
TAAGGCAGCTATCAAGTAAGTGTAGCATAAATTAGAATTGCCCTTACAGAAAGTGAAGAGGCTA
AAGTATTGGGTACCAGAACGTCATCTAAGACTAGCAATTGACTTTTGTTTGTTCTGTTTTCTAG
GGAGGAGTCTGAGGGGAAACTCAAGGGTATTCTGGGTTACGTTGAGGAGGACCTTGTTTCCACA
GACTTCCAGGGTGACAACAGGTGGAGATCTGTTTAAATTCGTCTTGTATTTGGATACTCGGTTA
CTCGAAGCCCCTGACCTCTTTTGCTCTGTGTAACAGGTCAAGCATCTTTGATGCAAAGGCCGGT
ATTGCTCTCAATGACAACTTTGTTAAGCTTGTGTCTTGGTATGACAACGAATGGGGATACAG
Conservation Information
Conserved circRNAs osa_circ_024287*
PMCS
Functional Information
Coding potential Y
Potential coding position 22734847-22734837(+)
22734920-22734883(+)
22735300-22734837(+)
Potential amino acid sequence MAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTDFQGDNRSSI
FDAKAGIALNDNFVKLVSWYDNEWGYRLSARCFLLSMES*(+)
MIRLRQLSRRSLRGNSRVFWVTLRRTLFPQTSRVTTGQASLMQRPVLLSMTTLLSLCLGMTTNG
DTGCRQGASCSQWKVDWYGFPCSNRGCLCR*(+)
MGIQAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILG
YVEEDLVSTDFQGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYRLSARCFLLSMES*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021