Plant Circular RNA Database

Detail information of Os12g0502300_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os12g0502300_circ_g.2
					
						ID in PlantcircBase
						osa_circ_011525
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 19140622-19142360  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os12g0502300						
					
						Parent gene annotation
						
							Similar to Cyclin A-like protein (Fragment). (Os12t0502300-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0502300_circ_g.1 Os12g0502300_circ_g.3 Os12g0502300_circ_g.4 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0502300-01:4

General Information
CircRNA Name	Os12g0502300_circ_g.2
ID in PlantcircBase	osa_circ_011525
Alias	NA
Organism	Oryza sativa
Position	chr12: 19140622-19142360 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os12g0502300
Parent gene annotation	Similar to Cyclin A-like protein (Fragment). (Os12t0502300-01)
Parent gene strand	-
Alternative splicing	Os12g0502300_circ_g.1 Os12g0502300_circ_g.3 Os12g0502300_circ_g.4
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0502300-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACCGTCCACGATTTGCAGCAGCTTGAGCTCGTGTGATTCGACCACTGGGTGCTTGGCAAGCAGT
AAGCACCGGATTTTCCTTCCTTCCAGCCATGTGAGCctcaacaagccaatcaatgagaatgcct
cgcatgccctttgtgatgtcacgttgcaaagcctccatgtaatttgacctgggtcttctgataa
gctgggaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 816
Transcript exons: 19140622-19140714,19140908-19141014,19141641-19141944,19
142049-19142360
CTCAACAAGCCAATCAATGAGAATGCCTCGCATGCCCTTTGTGATGTCACGTTGCAAAGCCTCC
ATGTAATTTGACCTGGGTCTTCTGATAAGCTCAGAGGCCATCAGATTTGTGTATATCTCTGAAG
CATAGGAAGCACACATTTGAGGATTTCCATTATCATTGTCAATATCTATAAAACCTAAACCACT
AGAGTCACCAGGCTTGGAGTCAGCGAGTTCATGTTTATCCATGGCGTTTCTTGCCTCAAAGAAT
GCCTCATGGCAATTACTGTCCCTGTTTCGCTCAATATTCTGCAATGACAGTAACCCCTCGTTTT
CAAACAAATTTGTGGGTTCCTCTGCTTTTGCCAAAAGCTCCACCTTTTGAGTTTCTTCAGAACT
TTTAGAATCAATCACAAATGAAGTTCCAGCAACAGCCGGAGGGGGTAGCTTAGGAACCTTCTTT
GCACACTGCTTTTTGCTCGGGATTTGTTTCACCCTTTGGGTGGGCTTTGACTTTTGCTGCAGCT
TGCTCGTGGTGGTGCAATTTTTGGATGAGTTGGCACAGCCGATGTTGGTTACATCCTTGAGCAC
TGTGCGCCGTTTAGGCTGAGGAGCTGAAGTTGCAGTACTTGCACTAGTGATTTCATCCAAAGCT
CCCCTTTTTGTCTTTCCTTTTGCTGTCTGCTTTCGTTCAGTTCTTGCGGGTAGTGATACGGAGG
GAGCAAACCCAAACCGTCCACGATTTGCAGCAGCTTGAGCTCGTGTGATTCGACCACTGGGTGC
TTGGCAAGCAGTAAGCACCGGATTTTCCTTCCTTCCAGCCATGTGAGC
						
					

						Genomic sequence
						
							CTCAACAAGCCAATCAATGAGAATGCCTCGCATGCCCTTTGTGATGTCACGTTGCAAAGCCTCC
ATGTAATTTGACCTGGGTCTTCTGATAAGCTGGGAATGGCATAAGCAGAAGATGGAGTTTGAAT
TCAAACAAGAAGAAAGCACCAATAACACAGGGATGAAACACAACCATGAAAAACTGAAATTACT
TTTGTCATACTAGAATGTTTGAAATATGAAGAAACCATGAGCATGTTAAGACAGTAAACAAGAT
TTTGTTTTTCATCAAAGAACAAAAACATACCTCAGAGGCCATCAGATTTGTGTATATCTCTGAA
GCATAGGAAGCACACATTTGAGGATTTCCATTATCATTGTCAATATCTATAAAACCTAAACCAC
TAGAGTCACCTGGAACAAAATAAATGACTCTTTAGCAATCAGCAGTGTACAGAAAAATTTATAT
TCATGTTTTTCTTGATTATGACTAGCAAAATACCCGTGCATTGCAAGGGGATTACAGTAAAGCC
CAAAAAGCAAAATAAAATTATTACCACTCTCTAATCATCATATCATATTTGGTACAATTGTATA
CATGTAAGTCGAGCTACACAGTTGCTCTAGCGATAAACAATTGGTATAAATTATCCACATTGTA
TTTGATTTATATAGTGGACACTGACATCATAGGCCCACATGACACTGGCAGAACCACCACCACC
ACTACCAACATCTGCAGTAGTAAGTACAGATTATCTACGAATATCTCAGAAGTCAGCAGTGTAC
AGAAACATTTATAGTCATGGTTTTGTACAGAAACATTATAGTCATGGTTATCTTGATTCTAAGT
TCTGTGACAACAGAAAGACAATCAAGAGTATGTTCCTGATAGAAGTGATTGACAACCGGTAGAT
AACATGACACGCTAAGGGATATATGAATCTTTTTTATAGAATTAGCTGACTTGAAAAGAAAAAT
CAGTAAGTCCAGATACTCATTGCTAAAAATAAGCACGCAACGTATGCAAAATAACTAACCAGGC
TTGGAGTCAGCGAGTTCATGTTTATCCATGGCGTTTCTTGCCTCAAAGAATGCCTCATGGCAAT
TACTGTCCCTGTTTCGCTCAATATTCTGCAATGACAGTAACCCCTCGTTTTCAAACAAATTTGT
GGGTTCCTCTGCTTTTGCCAAAAGCTCCACCTTTTGAGTTTCTTCAGAACTTTTAGAATCAATC
ACAAATGAAGTTCCAGCAACAGCCGGAGGGGGTAGCTTAGGAACCTTCTTTGCACACTGCTTTT
TGCTCGGGATTTGTTTCACCCTTTGGGTGGGCTTTGACTTTTGCTGGAACAAAGGAATAACCTT
ATCACTCCATCAACAATGTTCATGGAAAATAAAGGTCTAAAAATCATAATAGCATAATGCGATA
ATGCAGCAGCTCTTGATACCTGCAGCTTGCTCGTGGTGGTGCAATTTTTGGATGAGTTGGCACA
GCCGATGTTGGTTACATCCTTGAGCACTGTGCGCCGTTTAGGCTGAGGAGCTGAAGTTGCAGTA
CTTGCACTAGTGATTTCATCCAAAGCTCCCCTTTTTGTCTTTCCTTTTGCTGTCTGCTTTCGTT
CAGTTCTTGCGGGTAGTGATACGGAGGGAGCAAACCCAAACCGTCCACGATTTGCAGCAGCTTG
AGCTCGTGTGATTCGACCACTGGGTGCTTGGCAAGCAGTAAGCACCGGATTTTCCTTCCTTCCA
GCCATGTGAGC
						
					

			
		

Sequences
Splice junction sequence	ACCGTCCACGATTTGCAGCAGCTTGAGCTCGTGTGATTCGACCACTGGGTGCTTGGCAAGCAGT AAGCACCGGATTTTCCTTCCTTCCAGCCATGTGAGCctcaacaagccaatcaatgagaatgcct cgcatgccctttgtgatgtcacgttgcaaagcctccatgtaatttgacctgggtcttctgataa gctgggaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 816 Transcript exons: 19140622-19140714,19140908-19141014,19141641-19141944,19 142049-19142360 CTCAACAAGCCAATCAATGAGAATGCCTCGCATGCCCTTTGTGATGTCACGTTGCAAAGCCTCC ATGTAATTTGACCTGGGTCTTCTGATAAGCTCAGAGGCCATCAGATTTGTGTATATCTCTGAAG CATAGGAAGCACACATTTGAGGATTTCCATTATCATTGTCAATATCTATAAAACCTAAACCACT AGAGTCACCAGGCTTGGAGTCAGCGAGTTCATGTTTATCCATGGCGTTTCTTGCCTCAAAGAAT GCCTCATGGCAATTACTGTCCCTGTTTCGCTCAATATTCTGCAATGACAGTAACCCCTCGTTTT CAAACAAATTTGTGGGTTCCTCTGCTTTTGCCAAAAGCTCCACCTTTTGAGTTTCTTCAGAACT TTTAGAATCAATCACAAATGAAGTTCCAGCAACAGCCGGAGGGGGTAGCTTAGGAACCTTCTTT GCACACTGCTTTTTGCTCGGGATTTGTTTCACCCTTTGGGTGGGCTTTGACTTTTGCTGCAGCT TGCTCGTGGTGGTGCAATTTTTGGATGAGTTGGCACAGCCGATGTTGGTTACATCCTTGAGCAC TGTGCGCCGTTTAGGCTGAGGAGCTGAAGTTGCAGTACTTGCACTAGTGATTTCATCCAAAGCT CCCCTTTTTGTCTTTCCTTTTGCTGTCTGCTTTCGTTCAGTTCTTGCGGGTAGTGATACGGAGG GAGCAAACCCAAACCGTCCACGATTTGCAGCAGCTTGAGCTCGTGTGATTCGACCACTGGGTGC TTGGCAAGCAGTAAGCACCGGATTTTCCTTCCTTCCAGCCATGTGAGC
Genomic sequence	CTCAACAAGCCAATCAATGAGAATGCCTCGCATGCCCTTTGTGATGTCACGTTGCAAAGCCTCC ATGTAATTTGACCTGGGTCTTCTGATAAGCTGGGAATGGCATAAGCAGAAGATGGAGTTTGAAT TCAAACAAGAAGAAAGCACCAATAACACAGGGATGAAACACAACCATGAAAAACTGAAATTACT TTTGTCATACTAGAATGTTTGAAATATGAAGAAACCATGAGCATGTTAAGACAGTAAACAAGAT TTTGTTTTTCATCAAAGAACAAAAACATACCTCAGAGGCCATCAGATTTGTGTATATCTCTGAA GCATAGGAAGCACACATTTGAGGATTTCCATTATCATTGTCAATATCTATAAAACCTAAACCAC TAGAGTCACCTGGAACAAAATAAATGACTCTTTAGCAATCAGCAGTGTACAGAAAAATTTATAT TCATGTTTTTCTTGATTATGACTAGCAAAATACCCGTGCATTGCAAGGGGATTACAGTAAAGCC CAAAAAGCAAAATAAAATTATTACCACTCTCTAATCATCATATCATATTTGGTACAATTGTATA CATGTAAGTCGAGCTACACAGTTGCTCTAGCGATAAACAATTGGTATAAATTATCCACATTGTA TTTGATTTATATAGTGGACACTGACATCATAGGCCCACATGACACTGGCAGAACCACCACCACC ACTACCAACATCTGCAGTAGTAAGTACAGATTATCTACGAATATCTCAGAAGTCAGCAGTGTAC AGAAACATTTATAGTCATGGTTTTGTACAGAAACATTATAGTCATGGTTATCTTGATTCTAAGT TCTGTGACAACAGAAAGACAATCAAGAGTATGTTCCTGATAGAAGTGATTGACAACCGGTAGAT AACATGACACGCTAAGGGATATATGAATCTTTTTTATAGAATTAGCTGACTTGAAAAGAAAAAT CAGTAAGTCCAGATACTCATTGCTAAAAATAAGCACGCAACGTATGCAAAATAACTAACCAGGC TTGGAGTCAGCGAGTTCATGTTTATCCATGGCGTTTCTTGCCTCAAAGAATGCCTCATGGCAAT TACTGTCCCTGTTTCGCTCAATATTCTGCAATGACAGTAACCCCTCGTTTTCAAACAAATTTGT GGGTTCCTCTGCTTTTGCCAAAAGCTCCACCTTTTGAGTTTCTTCAGAACTTTTAGAATCAATC ACAAATGAAGTTCCAGCAACAGCCGGAGGGGGTAGCTTAGGAACCTTCTTTGCACACTGCTTTT TGCTCGGGATTTGTTTCACCCTTTGGGTGGGCTTTGACTTTTGCTGGAACAAAGGAATAACCTT ATCACTCCATCAACAATGTTCATGGAAAATAAAGGTCTAAAAATCATAATAGCATAATGCGATA ATGCAGCAGCTCTTGATACCTGCAGCTTGCTCGTGGTGGTGCAATTTTTGGATGAGTTGGCACA GCCGATGTTGGTTACATCCTTGAGCACTGTGCGCCGTTTAGGCTGAGGAGCTGAAGTTGCAGTA CTTGCACTAGTGATTTCATCCAAAGCTCCCCTTTTTGTCTTTCCTTTTGCTGTCTGCTTTCGTT CAGTTCTTGCGGGTAGTGATACGGAGGGAGCAAACCCAAACCGTCCACGATTTGCAGCAGCTTG AGCTCGTGTGATTCGACCACTGGGTGCTTGGCAAGCAGTAAGCACCGGATTTTCCTTCCTTCCA GCCATGTGAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.22247592

Conservation Information
Conserved circRNAs	NA
PMCS	0.22247592

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							19142356-19140624(-)
						
						Potential amino acid sequence
						
							MAGRKENPVLTACQAPSGRITRAQAAANRGRFGFAPSVSLPARTERKQTAKGKTKRGALDEITS
ASTATSAPQPKRRTVLKDVTNIGCANSSKNCTTTSKLQQKSKPTQRVKQIPSKKQCAKKVPKLP
PPAVAGTSFVIDSKSSEETQKVELLAKAEEPTNLFENEGLLSLQNIERNRDSNCHEAFFEARNA
MDKHELADSKPGDSSGLGFIDIDNDNGNPQMCASYASEIYTNLMASELIRRPRSNYMEALQRDI
TKGMRGILIDWLVEAHMAGRKENPVLTACQAPSGRITRAQAAANRGRFGFAPSVSLPARTERKQ
TAKGKTKRGALDEITSASTATSAPQPKRRTVLKDVTNIGCANSSKNCTTTSKLQQKSKPTQRVK
QIPSKKQCAKKVPKLPPPAVAGTSFVIDSKSSEETQKVELLAKAEEPTNLFENEGLLSLQNIER
NRDSNCHEAFFEARNAMDKHELADSKPGDSSGLGFIDIDNDNGNPQMCASYASEIYTNLMASEL
IRRPRSNYMEALQRDITKGMRGILIDWLVEAHMAGRKENPVLTACQAPSGRITRAQAAANRGRF
GFAPSVSLPARTERKQTAKGKTKRGALDEITSASTATSAPQPKRRTVLKDVTNIGCANSSKNCT
TTSKLQQKSKPTQRVKQIPSKKQCAKKVPKLPPPAVAGTSFVIDSKSSEETQKVELLAKAEEPT
NLFENEGLLSLQNIERNRDSNCHEAFFEARNAMDKHELADSKPGDSSGLGFIDIDNDNGNPQMC
ASYASEIYTNLMASELIRRPRSNYMEALQRDITKGMRGILIDWLVEAHMAGRKENPVLTACQAP
SGRITRAQAAANRGRFGFAPSVSLPARTERKQTAKGKTKRGALDEITSASTATSAPQPKRRTVL
KDVTNIGCANSSKNCTTTSKLQQKSKPTQRVKQIPSKKQCAKKVPKLPPPAVAGTSFVIDSKSS
EETQKVELLAKAEEPTNLFENEGLLSLQNIERNRDSNCHEAFFEARNAMDKHELADSKPGDSSG
LGFIDIDNDNGNPQMCASYASEIYTNLMASELIRRPRSNYMEALQRDITKGMRGILIDWLVE(-
)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	19142356-19140624(-)
Potential amino acid sequence	MAGRKENPVLTACQAPSGRITRAQAAANRGRFGFAPSVSLPARTERKQTAKGKTKRGALDEITS ASTATSAPQPKRRTVLKDVTNIGCANSSKNCTTTSKLQQKSKPTQRVKQIPSKKQCAKKVPKLP PPAVAGTSFVIDSKSSEETQKVELLAKAEEPTNLFENEGLLSLQNIERNRDSNCHEAFFEARNA MDKHELADSKPGDSSGLGFIDIDNDNGNPQMCASYASEIYTNLMASELIRRPRSNYMEALQRDI TKGMRGILIDWLVEAHMAGRKENPVLTACQAPSGRITRAQAAANRGRFGFAPSVSLPARTERKQ TAKGKTKRGALDEITSASTATSAPQPKRRTVLKDVTNIGCANSSKNCTTTSKLQQKSKPTQRVK QIPSKKQCAKKVPKLPPPAVAGTSFVIDSKSSEETQKVELLAKAEEPTNLFENEGLLSLQNIER NRDSNCHEAFFEARNAMDKHELADSKPGDSSGLGFIDIDNDNGNPQMCASYASEIYTNLMASEL IRRPRSNYMEALQRDITKGMRGILIDWLVEAHMAGRKENPVLTACQAPSGRITRAQAAANRGRF GFAPSVSLPARTERKQTAKGKTKRGALDEITSASTATSAPQPKRRTVLKDVTNIGCANSSKNCT TTSKLQQKSKPTQRVKQIPSKKQCAKKVPKLPPPAVAGTSFVIDSKSSEETQKVELLAKAEEPT NLFENEGLLSLQNIERNRDSNCHEAFFEARNAMDKHELADSKPGDSSGLGFIDIDNDNGNPQMC ASYASEIYTNLMASELIRRPRSNYMEALQRDITKGMRGILIDWLVEAHMAGRKENPVLTACQAP SGRITRAQAAANRGRFGFAPSVSLPARTERKQTAKGKTKRGALDEITSASTATSAPQPKRRTVL KDVTNIGCANSSKNCTTTSKLQQKSKPTQRVKQIPSKKQCAKKVPKLPPPAVAGTSFVIDSKSS EETQKVELLAKAEEPTNLFENEGLLSLQNIERNRDSNCHEAFFEARNAMDKHELADSKPGDSSG LGFIDIDNDNGNPQMCASYASEIYTNLMASELIRRPRSNYMEALQRDITKGMRGILIDWLVE(- )
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os12g0502300_circ_g.2

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