Detail information of AT2G05440_circ_g.4


General Information
CircRNA Name AT2G05440_circ_g.4
ID in PlantcircBase ath_circ_012854
Alias 2:1993591-1993744
Organism Arabidpsis thaliana
Position chr2: 1993591-1993744  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05440
Parent gene annotation Glycine-rich protein 9
Parent gene strand +
Alternative splicing 2_circ_ag.3 AT2G05380_circ_g.4 AT2G05440_circ_g.1 2_circ_ag.2 2_circ_ag.3 AT2G05440_circ_g.5 AT2G05440_circ_g.6 AT2G05440_circ_g.7 AT2G05440_circ_g.8 AT2G05440_circ_g.9 AT2G05440_circ_g.10 AT2G05440_circ_g.11 AT2G05440_circ_g.12 AT2G05440_circ_g.13 AT2G05440_circ_g.14 AT2G05440_circ_g.15 AT2G05440_circ_g.16 AT2G05440_circ_g.17 AT2G05440_circ_g.18 AT2G05440_circ_g.19 AT2G05510_circ_g.1 AT2G05510_circ_g.2 AT2G05510_circ_g.3 AT2G05510_circ_g.4 AT2G05510_circ_g.5 AT2G05510_circ_g.6 AT2G05510_circ_g.7 AT2G05510_circ_g.8 AT2G05510_circ_g.9 AT2G05510_circ_g.10 AT2G05510_circ_g.11 AT2G05520_circ_g.1 AT2G05520_circ_g.2 AT2G05520_circ_g.3 AT2G05520_circ_g.4 AT2G05520_circ_g.5
Support reads 3
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05440.5:1
AT2G05440.9:1
AT2G05440.7:1
AT2G05440.2:1
AT2G05440.1:1
AT2G05440.8:1
AT2G05440.4:1
AT2G05440.6:1
AT2G05440.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGACATGGAGGACACAACGGAGGAGGGGGCCACGGACTTGACGGATACGGAGGAGGTGGAGGA
CACTATGGAGGAGagtgaggaaactgtgcaacctgaaggttatggcggtggccacggaggacat
ggtggtcacggagggggaggaggcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTGAGGAAACTGTGCAACCTGAAGGTTATGGCGGTGGCCACGGAGGACATGGTGGTCACGGAG
GGGGAGGAGGCCACGGACATGGAGGACACAACGGAGGAGGGGGCCACGGACTTGACGGATACGG
AGGAGGTGGAGGACACTATGGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.229076904
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020