Detail information of BGIOSGA023261_circ_g.3


General Information
CircRNA Name BGIOSGA023261_circ_g.3
ID in PlantcircBase osi_circ_006837
Alias 6:25494110|25497127
Organism Oryza sativa ssp. indica
Position chr6: 25494110-25497127  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA023261
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA023261_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA023261-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACTATGGGATAGTTCATACGGTTCATGAACTATATGGTCCAGAGACAGCTGGAGTACTACTC
TCATCATTCAGTCGCTTGTTTACGATGGTCCTGCAGcaaaaaatgagaagaatgcaaatggtat
aaggcagttgttggaaaagaaagaagggattcttcgacagaagatgatgggtaaaagagttaat
tatgcatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAAAAATGAGAAGAATGCAAATGGTATAAGGCAGTTGTTGGAAAAGAAAGAAGGGATTCTTCG
ACAGAAGATGATGGGTAAAAGAGTTAATTATGCATGCCGGTCCGTTATATCTCCAGATCCATAT
TTGGCTCGTTAATGAAATTNGGAATTCCTCCTCGTTTTTGCCACACGATTGACATATCCCGAGG
TACCTGCATTGACCTATAATTGTTCATTACTATCAATTTTTAAGCATTGACCTATAATTGTTCG
TTACTATCAATTGTTAAAGTAACAATGTATATGTTTATGCTTGTTATATGATTATTCCAAATGT
ATTATACGTCAATTATCACCTTTTTGTTCATTGCTGTAGATTCTTGTTATGTTACTTTACTATT
ACTATGATGATAGATTGATACTATACACTGAAGTCCTAAAAATGTCCAAACTCCTTACAGTCCA
AACTACTTTACTATGATGTTATCTTTGTTCTTTGAAGCTCAAATTATATTTAAGCTGGTTACAT
ATGAAAATACATGCACCATCTTTTACATGAGTGAACTTACAGTTGCATATGACTGTTTCTTAAT
GATCTATATTTTTATATTGAGTCATCTGTAACAATTGATTGGTTATACTTCCTAGCTTCTCTAT
TTCCATTTAGAGATCTTGTAATATATAGGGGTAGGTGCCTGAGATATGTGTATGAAAGTCATCT
AACTGAAAACTACATATCTACTTTGGAAACCAGATTTCTTATACCCATAAACTATAGGGGATGG
AACCATTTGAACCGTGAATTAATTACTTTTCCTTCTTGGAGCAGCTTTTACATCATTTCTATAT
TGTTTCACGTGCAGAAAGTGACACCCTGGAATGCCAGAAAGCTACAAGAAGCTATAAATAATGG
TGCTGACATTCATCCTGGCGCAACCCATTACAGGGATAACAACAACATGTACAAGCTACAAGCT
GCCCCTCCCAAACGCCGTGCGATTGCTAAGATGCTACCTGCTTCTAGAGGATCCATTTCTCAAC
CAGGGAAAGATCCCAAGTGTGAATTTGAGAGCAAAGTGGTATATCGACACCTTCAAGATGGTGA
TGTTGTACTAGTCAATCGGCAGGTATAACTATTTGCTAGTTAGTAAGCTTGTGTTTTCTTCAGC
AGTAATACATGAAAACAATACTAGTCTCATTTAATAGTTATTTTCTGCTTGGTAATCTTGGTAT
TTCAAGGCGATTTCCCTCCAAATTAGTATTGTAAAGGTGTCTACCTATCCCAATTCCCCCCCTC
TCTCTCCCCCCTAGGGTGCCACCTTGATCTGTCTAATTGATGGTATGGCGCTGGTCTACCACTT
GAATAGCACCTAGAGCCTTGTTGAGCACTTCTCCAAATACCCATACTTGTTACTTGATGCACAA
TAGTTCAGTAGACAGGCTCACAGGCAGCATTTGTGAAATTGTACTAACATCCTACATCCTTATA
TTATTCTATTTGACAACCAAAATAGGCCATGGGAATAACATGTGAAATAAGGATTTTTAACTCT
TATGACTGAATTTGAATTTTGAGATGACATAAATAATTAGACTAGATCTACTACATAAATCCAT
TTGTGTAGGTCCATCAGTTGTAACAACTAGCAATACTGGTCAGATCAGTCAGAATGGTGCACAT
GTCTCAGTTTGATTAAGTACTTCACTTTGTTTCTAGAAAGGATACCCAGTTCTAAGAGCAAATT
GGAAGTTTGATTTACAACCACCAACTACTACACTACAAGCATACTTTACTAAGATGTCGTGCAG
CGAGGTTATGAGAGTATATCGCTATCACCCGTTTTATCTGTCTGCAATGTTGTATCTCTGCAAT
GTCTCTAATTTCATTTTTCTTGTGATGTGAAGCCTACTCTTCACAAGCCCAGCATGATGGCACA
TGTTGTTCGTGTGCTACCTGGAGAGAAGACAATTCGAATGCACTATGCTAATTGCAGGTATTAC
AACATATCTTCAGCAACACTGCCTATTTGTCTACTTCTGTTGATCAAACACTGTATTTCTTTTT
AGCACATACAATGCTGATTTTGATGGAGATGAAATGAATGTGCACTTTCCACAAGATGAAATAT
CTCGTGCTGAGGCCATCAACATTGTTGATGCAAATAAGCAGTACATTGGTCCAAGGAGTGGGGA
TGCTGTCAGAGGCCTCATTCAGGTAACACTGTGCATATGCAGTTGGGATGTTTCGGTTCTTCCA
CACTGTTGCTGTTGAGCACATTCAGTGGTGTATAATCAGGCTTCCCCTTTCCTGTGCATCTATC
TATTTAAATCAGTGAACTCATCCTGTCAGTAATATATTAAAAATCACACTATTTTTATTAATGC
TGTAACGGTTATTTTTATATTATAAGCTCGTTATATTCCACCTTTTTGTAGGACCACATTATTG
GTGCTGTACTCCTGACAAAGCTGGACACCTTTCTAAGCCGTGAGGAATATAATCAGCTTGTATA
TGGGTCTGTGCTCTCTTCAACTCGTAGATCTGGTCAGTTTGGTAAAAAGATATCTATTATTATG
GATGATGATGCACTCGAACCTGTACCTCCTGCTATTTGGAAGCCAAAGCCCCTATGGACAGGAA
AACAGGTTGGATGTTTTGAAGTTACCATTGGCTTCAATCTCCAGTTCTTCACAATTTCTTTAAT
TTTAGGTGCGCACCTCTTCTGTTTATACAGGTTATAACAACCATCTTGAACCATGTAACAAAAG
GTCGCCCTCCATTTACTGTGGAGAAGAAGGGGAGAATCGAAAAAGAATATCTAATCCCTGAAGA
ACGCAATGGTGATAAAGTTAAAACTATAAATCCTTCAGAGCAAGTTTTGTATGTTCATGACAAT
GAGCTCATAAAAGGCATGATAGATAAGGCCCAGTTTGGGAACTATGGGATAGTTCATACGGTTC
ATGAACTATATGGTCCAGAGACAGCTGGAGTACTACTCTCATCATTCAGTCGCTTGTTTACGAT
GGTCCTGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 25497055-25494116(+)
25494182-25494136(+)
Potential amino acid sequence MNYMVQRQLEYYSHHSVACLRWSCSKK*(+)
MMGKRVNYACRFYIISILFHVQKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPPK
RRAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDVVLVNRQPTLHKPSMMAHVVRVLPG
EKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVRGLIQDHI
IGAVLLTKLDTFLSREEYNQLVYGSVLSSTRRSGQFGKKISIIMDDDALEPVPPAIWKPKPLWT
GKQVITTILNHVTKGRPPFTVEKKGRIEKEYLIPEERNGDKVKTINPSEQVLYVHDNELIKGMI
DKAQFGNYGIVHTVHELYGPETAGVLLSSFSRLFTMVLQQKMRRMQMV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021