Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011233_circ_g.3 |
ID in PlantcircBase | zma_circ_009720 |
Alias | Zm08circ00055 |
Organism | Zea mays |
Position | chr8: 144126939-144127085 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d011233 |
Parent gene annotation |
SIT4 phosphatase-associated family protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | No-No |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d011233_T021:1 Zm00001d011233_T031:1 Zm00001d011233_T019:1 Zm00001d011233_T011:1 Zm00001d011233_T050:1 Zm00001d011233_T035:1 Zm00001d011233_T001:1 Zm00001d011233_T018:1 Zm00001d011233_T036:1 Zm00001d011233_T004:1 Zm00001d011233_T020:1 Zm00001d011233_T006:1 Zm00001d011233_T005:1 Zm00001d011233_T033:1 Zm00001d011233_T038:1 Zm00001d011233_T014:1 Zm00001d011233_T023:1 Zm00001d011233_T045:1 Zm00001d011233_T029:1 Zm00001d011233_T041:1 Zm00001d011233_T010:1 Zm00001d011233_T028:1 Zm00001d011233_T046:1 Zm00001d011233_T009:1 Zm00001d011233_T026:1 Zm00001d011233_T007:1 Zm00001d011233_T008:1 Zm00001d011233_T016:1 Zm00001d011233_T037:1 Zm00001d011233_T032:1 Zm00001d011233_T048:1 Zm00001d011233_T040:1 Zm00001d011233_T047:1 Zm00001d011233_T044:1 Zm00001d011233_T003:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.141156463 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |