Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024343_circ_g.3 |
ID in PlantcircBase | zma_circ_010214 |
Alias | zma_circ_0000161 |
Organism | Zea mays |
Position | chr10: 65882642-65883835 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d024343 |
Parent gene annotation |
Ethanolamine-phosphate cytidylyltransferase |
Parent gene strand | + |
Alternative splicing | Zm00001d024343_circ_g.1 Zm00001d024343_circ_g.2 Zm00001d024343_circ_g.4 Zm00001d024343_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d024343_T003:3 Zm00001d024343_T001:3 Zm00001d024343_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.249244747 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
65882676-65883832(+) |
Potential amino acid sequence |
MAIGLLAFESHQGLWNSGYYSQLFGIGGVLITLTILMLSTGYFGGIGAPFAPYFWPYLGQVPKK RERKRPVRVYMDGCFDLMHYGHANALRQAKLLGDQLVVGVVSDEEIVANKGPPVLSMEERLTLV SGLKWVDEVVPNAPYEITEEFMNTLFNKYSIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKR TEGVSSTDIVGRILLTFRQKDADTDLSVVVAEKSGEKSNDEVKSQLSHFLPTSRRIMQFSNGQE HYQDYTSTLKMAIGLLAFESHQGLWNSGYYSQLFGIGGVLITLTILMLSTGYFGGIGAPFAPYF WPYLGQVPKKRERKRPVRVYMDGCFDLMHYGHANALRQAKLLGDQLVVGVVSDEEIVANKGPPV LSMEERLTLVSGLKWVDEVVPNAPYEITEEFMNTLFNKYSIDYIIHGDDPCLLPDGTDAYALAK KVGRYKQIKRTEGVSSTDIVGRILLTFRQKDADTDLSVVVAEKSGEKSNDEVKSQLSHFLPTSR RIMQFSNGQEHYQDYTSTLKMAIGLLAFESHQGLWNSGYYSQLFGIGGVLITLTILMLSTGYFG GIGAPFAPYFWPYLGQVPKKRERKRPVRVYMDGCFDLMHYGHANALRQAKLLGDQLVVGVVSDE EIVANKGPPVLSMEERLTLVSGLKWVDEVVPNAPYEITEEFMNTLFNKYSIDYIIHGDDPCLLP DGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILLTFRQKDADTDLSVVVAEKSGEKSNDEVKS QLSHFLPTSRRIMQFSNGQEHYQDYTSTLKMAIGLLAFESHQGLWNSGYYSQLFGIGGVLITLT ILMLSTGYFGGIGAPFAPYFWPYLGQVPKKRERKRPVRVYMDGCFDLMHYGHANALRQAKLLGD QLVVGVVSDEEIVANKGPPVLSMEERLTLVSGLKWVDEVVPNAPYEITEEFMNTLFNKYSIDYI IHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILLTFRQKDADTDLSVVVAEKS GEKSNDEVKSQLSHFLPTSRRIMQFSNGQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |