Detail information of AT2G04305_circ_g.1


General Information
CircRNA Name AT2G04305_circ_g.1
ID in PlantcircBase ath_circ_012773
Alias At_ciR4186
Organism Arabidpsis thaliana
Position chr2: 1502749-1502997  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G04305
Parent gene annotation At2g04305/T23O15.7
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT2G04305.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTCAACAAGAACTCAAGAACATGCTCCTCAATCACACTAGGAACTTCCGAGAGAAGCGATT
GACCCATAGGCGAGAAACCTAACCTAGGAACTCGTCctctatccatttctagctccaccccatc
caattcgatctcaagttcagtaacaacatcttgaagtcgatcaacatgtgtgtcaataatatgc
acaacaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTATCCATTTCTAGCTCCACCCCATCCAATTCGATCTCAAGTTCAGTAACAACATCTTGAAG
TCGATCAACATGTGTGTCAATAATATGCACAACAAGATTCGAAACAGAAGTTGGCACAGGGTTA
TCAGCTTCCTCAGAATGGTTCATTTTCAACAAGAACTCAAGAACATGCTCCTCAATCACACTAG
GAACTTCCGAGAGAAGCGATTGACCCATAGGCGAGAAACCTAACCTAGGAACTCGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.205539358
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015