Detail information of Os06g0135900_circ_g.1


General Information
CircRNA Name Os06g0135900_circ_g.1
ID in PlantcircBase osa_circ_029572
Alias NA
Organism Oryza sativa
Position chr6: 1902846-1903662  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os06g0135900
Parent gene annotation Similar to Sec1p-like protein 2 (Fragment). (Os06t0135900-01)
Parent gene strand -
Alternative splicing Os06g0136000_circ_igg.1 Os06g0135900_circ_g.2 Os06g0136000_circ_g.1
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0135900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACCTGCATCAACTTTTCCCCTTTGTCACCTTCAAACTTCTCTGGATATACAATTGCATATAT
AATAAGCAACCTCAATTTGTTTTCTGGGCTCATATCcttttgtgcatcaaatttgagagagaag
ccgccaggccgtgatgccttttttgtatctgaaccaaccaagtatcttaaactatttatggcat
ccatctca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTGTGCATCAAATTTGAGAGAGAAGCCGCCAGGCCGTGATGCCTTTTTTGTATCTGAACCA
ACCAAGTATCTTAAACTATTTATGGCATCCATCTCATCATGTGGCAGTTTTGCTAGCTGCATAA
ATGAAAGTTTGTTCAAAATGTCATATGTTTATATAATCAACTGCATGCAATTGTACCCCCCAAA
ACCAACTAATAGAACCCTCTGTGTCACATTTTCTTTAGTAAACACTCCGAATAGCACTATAGAA
GCACTCAAGGAAACCATTGAACAATGATAATAGTCAACCTGGTAATCTATACTTCCACGCTTAT
AACAAGCAAAATCCGAAACTGTGTTTATGTATGATTATGTCATGGGTAATTGGGCTGAGAGGCT
GAGGCCAGTGGTCATCCCAACACCCTCTGGGTAGCACGCTACTGTAGTAGTTCGTTAGGTAAGA
TTAGATTGAGTCCATTCTTAGGGGTTAAGTCGTCCCATCTATATAAGGATGGATTGTATCCTAT
GCAATTATGAATTAAGTGATAAATCAGATTAATCCAATCTAATCCCTCTCAATGTCCTACCAAC
CTAAATCTACCTCTCACCCCTAGCAGCAGCAGCCGCTTCCACGCATCTATCCACCCGACGGTGT
TTATCCCGTCATGTCCTCGGGTTGTGACAGATTAATGTAATAATTGCACTAATAAGTAATGTAA
AACTTGATAGGAAATACCTGCATCAACTTTTCCCCTTTGTCACCTTCAAACTTCTCTGGATATA
CAATTGCATATATAATAAGCAACCTCAATTTGTTTTCTGGGCTCATATC
Conservation Information
Conserved circRNAs NA
PMCS 0.1323199
Functional Information
Coding potential Y
Potential coding position 1902932-1903659(+)
1903661-1902848(-)
Potential amino acid sequence MASISSCGSFASCINFSPLSPSNFSGYTIAYIISNLNLFSGLISFCASNLREKPPGRDAFFVSE
PTKYLKLFMASISSCGSFASCINFSPLSPSNFSGYTIAYIISNLNLFSGLISFCASNLREKPPG
RDAFFVSEPTKYLKLFMASISSCGSFASCINFSPLSPSNFSGYTIAYIISNLNLFSGLISFCAS
NLREKPPGRDAFFVSEPTKYLKLFMASISSCGSFASCINFSPLSPSNFSGYTIAYIISNLNLFS
GLI(+)
MSPENKLRLLIIYAIVYPEKFEGDKGEKLMQLAKLPHDEMDAINSLRYLVGSDTKKASRPGGFS
LKFDAQKDMSPENKLRLLIIYAIVYPEKFEGDKGEKLMQLAKLPHDEMDAINSLRYLVGSDTKK
ASRPGGFSLKFDAQKDMSPENKLRLLIIYAIVYPEKFEGDKGEKLMQLAKLPHDEMDAINSLRY
LVGSDTKKASRPGGFSLKFDAQKDMSPENKLRLLIIYAIVYPEKFEGDKGEKLMQLAKLPHDEM
DAINSLRYLVGSDTKKASRPGGFSLKFDAQK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017