Detail information of PGSC0003DMG400022604_circ_g.1


General Information
CircRNA Name PGSC0003DMG400022604_circ_g.1
ID in PlantcircBase stu_circ_000693
Alias chr05:6559630|6564227
Organism Solanum tuberosum
Position chr5: 6559631-6564227  JBrowse»
Reference genome 3.0.38
Type   ue-circRNA
Identification method CIRI2
Parent gene PGSC0003DMG400022604
Parent gene annotation Serine/threonine-protein phosphatase
Parent gene strand +
Alternative splicing PGSC0003DMG400022604_circ_g.2
Support reads NA
Tissues stem
Exon boundary   No-Yes
Splicing signals   GT-GA
Number of exons covered PGSC0003DMT400058216:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCC
CATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGaactgcgattctgttggtcaatttcata
gcaattggatttttacctcgattcgatctgaggacttttgatattttttgctaatcgaagcggt
gaggaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACTGCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTTACCTCGATTCGATCTGAGGACT
TTTGATATTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGATAGGTGATTGTAGAGGATAATT
TTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCA
AGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGA
ATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCACGGACAGTTTTAC
GATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAG
ATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTTTTTTATAGGAATTTGCATATGATTTG
TTGGATTTTTTTGTTAATTTTCTATGCATTTGATTTGTTGTAGTGACATAGGTGAAATGTGAAT
GGACATAAATAGGATGTAGAAATAAGAGTGTTTCTGCTAATGTAGGCAGCACTTGAAAGATAGT
ATAGGTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGGTTCTGCAAAGTAGCAAGCT
TTATGTTGGTTATTTTGTGGTTTGGCGTGATTCGGGCTTGTATTTCTCAAGATATTCATGATAA
GGATGATATGTGGTTGGGCTGTTCATTTATTGGTAGTGTTACTATAATGTGTCGGACAAATGAA
GCTTTATTTTGATCTATTTGTCGTTTATACTCGTGAATGATGACGCGTGGTTGTGATGTGGATC
TCTAATGTACTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAG
GCAAATGTGGGAGATGTTTCTCTTCATTTGGTGTATTTCTTTCGGTGCTAAACACGCTCATTTT
CATTTGTTTTCTGTATATAGTTTACTGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCA
TGGGTTCCATAAAATGACTTAACTGTCTTTTGTTTTAAATGACTGTTTTGATGGAGGCTTCCTT
TTTAGTTTTTTTTCCTGAATATTTTTGCATCTAAGGTAGATTTCATCATATACATCTCCACTCC
ATAAATTGCGATGACAGTGTACATTTTATTTCATGCTTACTTATTTGTATGTTGACTAGTACCT
CGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTATCATTAATAATTGCCTAATTAAT
GCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTCTGAAGGTCCGTTATA
GAGATAGAATCACAATTCTTAGGGGAAACCACGAAAGCCGACAGATCACTCAAGTGTGAGTCGC
TTACATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTTCTTA
ACAGCTGATATTCAGATGTTCCTTCTTTTCGATTGCTTAAACGATCTGGTTTATGTATGATATT
AGGGGTTTTACATTTATGCAATGCTACTTTATCCAAAAAAAAGAGAGAAGATGTTTCTGCACTG
TTCTTATATTTTCCATTTAATCTACTGAACTGTTATTTTTCCAATTACAAGAATTTAGAACTAA
TATGAAATGCTGCCTAAGTATGTAAATAGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAAT
GGTCTTCTTTATGCTGTTTGGTGCATGATACTTTTATATGTGTTTCTGTCACAGTGTCACATAG
AGTTTTACTTGTATAGGATGTTCCTAGATGCCACTTTCTTTAAAAATTTATCCAGTTTGGTGGA
TTTCTCTTATTTTGACTTTCTGCTGTGTTAGCATCCTCTTTGCTTCTCCTTGGGTTTGGGAAGA
GTAGCAATGTAAATTCTATGCTTATATGGCTCAAATATCCTTTCTTGAATTGTGTATGCTCTTA
TTGCACTCAAGCAACATGTATAATGGACTGATGCTTCTCTTCAATGTACCCAGTACAACTCTTC
TTTACATTTCTCACCCTCTTTCCAGAAATAAAAGAAAATAAAAAAGGAACATGGAGGTCAGGTG
TGAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGAAAGAAGACAAACG
TGTTTCTTGAATTCTATGCAGCAAAAACATTACTTAGGTTGCGGGTTTTCCTTGTCATAAAAAA
AAAAAAAAACATTACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAACATTACTTAGGTAATGTCAATGAG
AAGGGAGCAATACTTTTGGAGAATCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGATA
TGTTTGTTCATTGCTTCGGTTTTCCAGCTCCCATTGTGGACCTTGATCACTGATCATGATTATG
TGCAAGGGGATTACAAGGTGGGGAATTTGAACCCTCACCAACAAGGTGAAAATTCAGGCAACTG
GACTACTAAAATTCCTAAGTATTAGGTTAATCAGGTTGATTAAGCTTTGATAGAAATTGGTCTA
GTTGAACTGCTGGAATAATCCGAGAACTATTGTAATTCTTCCTGGAGATTGAGATACCAATACA
AGCAAAATCGTTTACAGGGTCTATGCGAAGATCATGTATACCTGAAGTGAAGCTCCTAATATTG
CAACTCCCCACCCCTAGTCTCTAAAGTCATGAAGCTCTTTGAATGGACAAACTTAGCAATCAAA
TTCAACAGGAGGATATGGAGGATGTAACTGAGTAGTTGGACAATGATGCCATATTATAAGCTTG
AACGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCTTACGCATGTGTTTTTAGTTATCTT
TCAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTG
CATTGAGATAATTCTTTAGAGCACAAGGTTCACTTAAGCAAAACTTTGTTCTTTAACCACTCGA
TAGATGTTTAACTTATGGTTACTTATCAATGAAGGTATCTCTACGCAATCCTTGTAGTTTTTTA
TTTGGCAAGTATATTTTTGGGCAGTCTTGTGGGGATGAATCATCTATGCTACTGCTTCTCATGA
TCAGCTTCCCTACTTGTTTTATGCTGAATACAATATGACTGCAGGCTCTAGTCATGTTCACATT
AATTGACAGATCCCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGCTTGAGGAAGTATGGAA
ATGCTAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTAACGGCACTCATAGA
GAGTCAGGTTTGAGCTCTTACTGAACTGGCAATTTACTTGAACATTATTGTTAGCGGGTTTTAA
CTTGCCTAATTTACTTAAAACTGTAGATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGA
TACACTCGATAACATCCGAGCACTGGACCGTATACAAGAGGTATAGAAATAGTTGTGTGATTCA
AACTTTACATGTTCATGATATGTTAAACTAGTTTGCGTTGTATTTTGTCACTGCCTGTTCTCCC
TCCTCTTGCTCTATCCGACACCATGTATCAAGTTAATTTCCTATTTACCTAACAAAATTGATTA
TTATGGCACAAGAGGACTACAGATGTGGTTACATCCTTTTTATTCAACAGAACTACAGATAACC
AAACAAATCAAGGCATGAACAGGAAGAAAATTATGTATTTTTTTATAATGAGTTCGAAAGAGTC
TTATTTTCTTTTCTAATGTGTTGTAGAATAGGTTTGACAATGTTTTGTATATGTTGCATAGAGG
CTTGTAGTGTAGTCTATTCACCAGTGAATGTGATCGACTTACTATAACACTTTCCTATTTCTTA
GTTGCCCTACACTTATTTGCTCTAGTCGCTTCTATTATTTCAGACGTTTCATGATTTTTATATC
TTTATGGCAATGTTACTAATCCTGTACTATTGCTTCTTTGTTGTGGTTGTTAGGTGCCACATGA
AGGGCCGATGTGTGATCTCCTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCACCT
CGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCT
CACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.105347159
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018