Detail information of AT5G10940_circ_g.2


General Information
CircRNA Name AT5G10940_circ_g.2
ID in PlantcircBase ath_circ_037488
Alias At_ciR5820
Organism Arabidpsis thaliana
Position chr5: 3449946-3452190  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT5G10940
Parent gene annotation Putative uncharacterized protein At5g10940
Parent gene strand -
Alternative splicing AT5G10940_circ_g.1 AT5G10940_circ_g.3 AT5G10940_circ_g.4 AT5G10940_circ_g.5 AT5G10940_circ_g.6 AT5G10940_circ_g.7 AT5G10940_circ_g.8 AT5G10940_circ_g.9 AT5G10940_circ_g.10
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G10940.2:6
AT5G10940.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACATTCATCAGGTAGACATGCTCCCCACTGTAACTGAGCAAAACTTCTTCGCCATTAGGACT
GAAAGTAACATGTGTTAGGTGCAAATTTGTTCGCCCctgataagacgtcctatcattttgagat
gacgatgcagttcctgaggaggcattgtcaactgtattttccatcggtttatcatcacctactc
tatgaatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 972
Transcript exons: 3449946-3450277,3450750-3450861,3450983-3451093,3451183-
3451353,3451436-3451575,3452085-3452190
CTGATAAGACGTCCTATCATTTTGAGATGACGATGCAGTTCCTGAGGAGGCATTGTCAACTGTA
TTTTCCATCGGTTTATCATCACCTACTCTATGAATTCGTAAGTTGAGACTGCCACGCATAGAAT
TTGAGTCTGTATCTCGTCCTTCATCATCAGACAACGAAGTTTGAATATCCAACTCCAATTCCTC
ATCATAATCAGAATCTTCTCTTTCGGATCTCGACATATCATGTGAACTGTCACTGTTGGCCTCT
GATCTATATAGTATGTCGCTTAAAGAAAGTACTCTAGTAGTTCCAGCTCCTGTCTCTTCGTTTT
TCTCAGCTCCAGCTGCTTGAAGATCCCTTTTAATGCTCTCCACTTTTGCCACTATATCGGCATC
TGATGGGTTCATATGTTGTGCAGCAGTCGCAAAATCTAGAGCTTCTTTACATTTTCCCAATTGC
TGCAGCGCTTCAGACATGTAGTAATGAGCTTTAAAGGATGAAGCATCAATTCTCCGAGCATTAT
GGCAATCTCTTACGGCCATATGAGCATCATTCTTCCACTTCCTCTTGAGTAACAATGCGGCACG
AGTACAAAGGCATTCATGCCTTAGCGCAGACTCAATATCATTAGAATGAGCATCCAGAACTTCA
TTAGCTGCCTCAATTGCATAGAAAACATCTGTACCCTCTTCTAAAGACCATTTAGCAATTTCTA
CCAATTCCGTACACTTCTTAACCGTTGCAGCATTGCTACTTCTGTGAAAGCCATTTTGAGGAGT
GGTGGAAACCTGAGGTGGAGATTCTACATCGTGGAGGTTGTTACTGAAAGAAAACAAGTTATCT
ACATCTCCTGGTGTGTATTGCATGATTCCAGTGCCATTATTTACATTCATCAGGTAGACATGCT
CCCCACTGTAACTGAGCAAAACTTCTTCGCCATTAGGACTGAAAGTAACATGTGTTAGGTGCAA
ATTTGTTCGCCC

Genomic sequence CTGATAAGACGTCCTATCATTTTGAGATGACGATGCAGTTCCTGAGGAGGCATTGTCAACTGTA
TTTTCCATCGGTTTATCATCACCTACTCTATGAATTCGTAAGTTGAGACTGCCACGCATAGAAT
TTGAGTCTGTATCTCGTCCTTCATCATCAGACAACGAAGTTTGAATATCCAACTCCAATTCCTC
ATCATAATCAGAATCTTCTCTTTCGGATCTCGACATATCATGTGAACTGTCACTGTTGGCCTCT
GATCTATATAGTATGTCGCTTAAAGAAAGTACTCTAGTAGTTCCAGCTCCTGTCTCTTCGTTTT
TCTCAGCTCCAGCTGATTTGTCAAACAAAAGACAAGTACAAGAATATTAAAATGTGAATATAAA
TTCCCTTGCCTGTTGAATCATGAAAGCTTCTAAGCACATTAATACTCCTTGGGAATGAAAGAAT
CCACCAAATCTAAAAGAATAGCTCTACATCTGTTACTTTGATACACTTTTGAATCAAAAGAAAT
ATCAGACATATTAACCAACAAAATTAGATGTAGAAAGAGAAGCCAGATGGACTTAAAGATGATA
CTACGAATCTATGCTTAAGATTTTCTCTCATGTGTCCACATTGATTACTAGAAACGAGTGGTTA
TAACTCATTGAAGAGCCTAAAAAAACAAAAAACAAAAACATCTAAGCAGAAACATCTTGAACCT
CTATCCTAGCTCATAGAGGAAAACAGAAACAGCAGGAAAGTAGATAACATCTGTTACTAAGCAA
ACCTGCAGGAAAAGACATACATCAGTTGGCACAAACCTGCTTGAAGATCCCTTTTAATGCTCTC
CACTTTTGCCACTATATCGGCATCTGATGGGTTCATATGTTGTGCAGCAGTCGCAAAATCTAGA
GCTTCTTTACATTTTCCCAACTGCGTGAAAGCACATATGTATATGAAATGGAAGGGTGACTAAA
ATAAATGCTTATTGCAGAACCATCTCTATGTCAAATAGTAAACTTAAAATTAACTGTGATCAGA
GCTATGAATTTACTTGCTGCAGCGCTTCAGACATGTAGTAATGAGCTTTAAAGGATGAAGCATC
AATTCTCCGAGCATTATGGCAATCTCTTACGGCCATATGAGCATCATTCTTCCACTTCCTCTGA
AAAATAAACAAATCAGCTGATTATGGTTATTAGAGAGGAGTAATGTAGGGATTCAAGCTAGTTA
TAGACACCAGTTCTAAAGGACCTTGAGTAACAATGCGGCACGAGTACAAAGGCATTCATGCCTT
AGCGCAGACTCAATATCATTAGAATGAGCATCCAGAACTTCATTAGCTGCCTCAATTGCATAGA
AAACATCTGTACCCTCTTCTAAAGACCATTTAGCAATTTCTACCAATTCCGTACACTTCTTAAC
CTGAAAAGAACGGCGTCAGATGCACTAAGAATATGGAATGACAAGGTCACCATATGGAACAATT
ACAGAGGGAGGTGCGAACCGTTGCAGCATTGCTACTTCTGTGAAAGCCATTTTGAGGAGTGGTG
GAAACCTGAGGTGGAGATTCTACATCGTGGAGGTTGTTACTGAAAGAAAACAAGTTATCTACAT
CTCCTGGTGTGTATTGCATGATTCCAGTGCCTACAAGTCACAAACAAAGGAATGAATCATCATA
TATTGAGCTTAAGTCAAAGTACCAAAATGTTAGGAAAACTGACATTTTCAATGCGAAAAGGTGC
CTAAAACAAGATAACTAGCAAAGAAAAATATTTCTAAACTAAGTGGTGAAGTACAGATTGGCAG
TACAAATGTAAATAACAAAAGGTAAGCAAAAAACTGGTGGGCTAACACATCCATCATCCTTAAT
CCAATTTTTAAAAGGGCCACATAATAGCATATCCATTTGAAATCTCAGAGGATATCAATAACTT
TCCAAATGTTCCATCGAAATTTTTCATGCAGGATTACAATGTCTTTAGCAGAACTGAAAGGGGC
ATGAACAGGAAAAAAAAAAGAAAACAAAGCGACATAAATCAAAATATTTCAATATGAAGTTCAA
TTATTTTTCTTAACAAATTCAAGTTCATACTGCACGATTAACTATTCACGGAATTTAAGCTTTA
AGCAGCAAACAACTCAACTGCAAATACCATTATTTACATTCATCAGGTAGACATGCTCCCCACT
GTAACTGAGCAAAACTTCTTCGCCATTAGGACTGAAAGTAACATGTGTTAGGTGCAAATTTGTT
CGCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.182787544
Functional Information
Coding potential Y
Potential coding position 3452101-3449948(-)
Potential amino acid sequence MNVNNGTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAATVKKCTELVEIAK
WSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWKNDAHMAVRDCHNARR
IDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAKVESIKRDLQAAGAEKNEET
GAGTTRVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDDEGRDTDSNSMRG
SLNLRIHRVGDDKPMENTVDNASSGTASSSQNDRTSYQGRTNLHLTHVTFSPNGEEVLLSYSGE
HVYLMNVNNGTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAATVKKCTELV
EIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWKNDAHMAVRDCH
NARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAKVESIKRDLQAAGAEK
NEETGAGTTRVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDDEGRDTDSN
SMRGSLNLRIHRVGDDKPMENTVDNASSGTASSSQNDRTSYQGRTNLHLTHVTFSPNGEEVLLS
YSGEHVYLMNVNNGTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAATVKKC
TELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWKNDAHMAV
RDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAKVESIKRDLQAA
GAEKNEETGAGTTRVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDDEGRD
TDSNSMRGSLNLRIHRVGDDKPMENTVDNASSGTASSSQNDRTSYQGRTNLHLTHVTFSPNGEE
VLLSYSGEHVYLMNVNNGTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAAT
VKKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWKNDA
HMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAKVESIKRD
LQAAGAEKNEETGAGTTRVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDD
EGRDTDSNSMRGSLNLRIHRVGDDKPMENTVDNASSGTASSSQNDRTSYQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015