Detail information of Zm00001d027503_circ_g.3


General Information
CircRNA Name Zm00001d027503_circ_g.3
ID in PlantcircBase zma_circ_000529
Alias circ101
Organism Zea mays
Position chr1: 6834826-6835071  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI
Parent gene Zm00001d027503
Parent gene annotation Calcium-binding EF hand family protein
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d027503_T024:2
Zm00001d027503_T029:2
Zm00001d027503_T041:2
Zm00001d027503_T004:2
Zm00001d027503_T017:2
Zm00001d027503_T002:2
Zm00001d027503_T018:2
Zm00001d027503_T027:2
Zm00001d027503_T007:2
Zm00001d027503_T044:2
Zm00001d027503_T036:2
Zm00001d027503_T009:2
Zm00001d027503_T043:2
Zm00001d027503_T013:2
Zm00001d027503_T031:2
Zm00001d027503_T020:2
Zm00001d027503_T033:2
Zm00001d027503_T039:2
Zm00001d027503_T042:2
Zm00001d027503_T012:2
Zm00001d027503_T021:2
Zm00001d027503_T045:1
Zm00001d027503_T003:2
Zm00001d027503_T025:2
Zm00001d027503_T010:2
Zm00001d027503_T035:2
Zm00001d027503_T022:2
Zm00001d027503_T019:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTACATCCAATTTGTAATTGTGCTTACAAGATCTTGCATCTTTGTGCGGTAATACTCCAATTT
CTCTCTGGAATCCAGGACCTGCTTCTCCACCTCAACcctcgcgtttatcagaggacgccctttc
tgtaatctcattcagcctattctcgcaccgacttttatacaggaccttcaagaaaaggaaaata
aaggaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGCGTTTATCAGAGGACGCCCTTTCTGTAATCTCATTCAGCCTATTCTCGCACCGACTTTT
ATACAGGACCTTCAAGAAAAGGAAAATAAAGGAATTAGAAAAATGATGGAAACAACTTTCAATT
ACAATGTCCAGCGACTTAACTACATCCAATTTGTAATTGTGCTTACAAGATCTTGCATCTTTGT
GCGGTAATACTCCAATTTCTCTCTGGAATCCAGGACCTGCTTCTCCACCTCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.485902608
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b