Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d024499_circ_g.1 |
ID in PlantcircBase | zma_circ_010222 |
Alias | zma_circ_0000172 |
Organism | Zea mays |
Position | chr10: 74394952-74395593 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d024499 |
Parent gene annotation |
Nuclear factor 1 A-type isoform 2 |
Parent gene strand | - |
Alternative splicing | Zm00001d024499_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d024499_T001:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.163499507 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
74395547-74395056(+) 74395533-74394964(+) 74395549-74394954(-) 74395005-74395564(-) |
Potential amino acid sequence |
MARVTVTADQLPPLPLRLSRMNLQLNTGCRMLPWSWTTCGLSAISSSNWKM*(+) MARDPWLVSLSLQTSSLHCRCACRG*(+) MDPEPFVRLSVGQLGLKLPGGNASKAAGRLCDCEIRLGGFPVQTAPVPLVHSPAFNLDPFTNAA VFSLEESDLKALAAPGCFRAPRSSCLEVAVYYLARFGASRCGVLACGRKRLVGVFRVELASSEW RDGKPVLLHHGWAGIGKGAARPELHLRVKLEADPRYIFQFDDEIALNPQVVQLHGSIRQPVFSC KFIRDRRNGNGGSWSAVTVTRAMDPEPFVRLSVGQLGLKLPGGNASKAAGRLCDCEIRLGGFPV QTAPVPLVHSPAFNLDPFTNAAVFSLEESDLKALAAPGCFRAPRSSCLEVAVYYLARFGASRCG VLACGRKRLVGVFRVELASSEWRDGKPVLLHHGWAGIGKGAARPELHLRVKLEADPRYIFQFDD EIALNPQVVQLHGSIRQPVFSCKFIRDRRNGNGGSWSAVTVTRAMDPEPFVRLSVGQLGLKLPG GNASKAAGRLCDCEIRLGGFPVQTAPVPLVHSPAFNLDPFTNAAVFSLEESDLKALAAPGCFRA PRSSCLEVAVYYLARFGASRCGVLACGRKRLVGVFRVELASSEWRDGKPVLLHHGWAGIGKGAA RPELHLRVKLEADPRYIFQFDDEIALNPQVVQLHGSIRQPVFSCKFIRDRRNGNGGSWSAVTVT RAMDPEPFVRLSVGQLGLKLPGGNASKAAGRLCDCEIRLGGFPVQTAPVPLVHSPAFNLDPFTN AAVFSLEESDLKALAAPGCFRAPRSSCLEVAVYYLARFGASRCGVLACGRKRLVGVFRVELASS EWRDGKPVLLHHGWAGIGKGAARPELHLRVKLEADPRYIFQFDDEIALNPQVVQLHGSIRQPVF SCKFIRDR(-) MAASGSPCSAASSSATGATAMEGAGLQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |