Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05870_circ_g.3 |
ID in PlantcircBase | ath_circ_000887 |
Alias | 1:1772097-1772533 |
Organism | Arabidpsis thaliana |
Position | chr1: 1772097-1772533 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G05870 |
Parent gene annotation |
At1g05870 |
Parent gene strand | - |
Alternative splicing | AT1G05870_circ_g.1 AT1G05870_circ_g.2 AT1G05870_circ_g.4 |
Support reads | 2 |
Tissues | seedling |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G05870.3:2 AT1G05870.11:1 AT1G05870.9:1 AT1G05870.8:2 AT1G05870.4:1 AT1G05870.6:1 AT1G05870.7:2 AT1G05870.12:2 AT1G05870.2:2 AT1G05870.5:1 AT1G05870.10:1 AT1G05870.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.207904463 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |