Detail information of AT2G11000_circ_g.5


General Information
CircRNA Name AT2G11000_circ_g.5
ID in PlantcircBase ath_circ_013155
Alias 2:4345761-4346419
Organism Arabidpsis thaliana
Position chr2: 4345761-4346419  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G11000
Parent gene annotation MAK10 homologue
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G11000.3:2
AT2G11000.2:2
AT2G11000.1:2
AT2G11000.4:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACAGATAGTTTCTTCAACCGCATTCAAGAGTAACAAGCCCTTGGCATCTTCTTCTCCACTAAA
AGGAAGACCATATGTCATCGTAAAAAGATCCTCTTCggaaacgtatccggcataacagagattt
gcaaaaactctcttccagatggggattactttgtagaggttccaattctgcatctttaacaaac
aaaaggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAACGTATCCGGCATAACAGAGATTTGCAAAAACTCTCTTCCAGATGGGGATTACTTTGTAG
AGGTTCCAATTCTGCATCTTTAACAAACAAAAGGAAAGAAAGTTATTGTTCTCAGTTCGTGCTG
CTGTGCACCATTGTTACAAATAAACAATAGACCATATCACTCAAAGAGATGGTAAATTTTTAAA
AAGAAAAAATCAATTGTAATAATCAGCGGACTTCACATATAAATCATTACTCAATAGAAGACTC
AAAGTTATCGTATATAGGCCAGAGAGGCTAATTTCAAGTTGGTATATGCTTAGAGAGCACTTGC
AAAATATCTAATTCCAATGCATTATACTGTCTCCAAATCACAAATCACCATTAAATGTGTAAAC
AACATATCATAAGAAAAGAAGCAACAGAAGACTCTTCGATCCCCTCATATGAATACGCTCTTCA
TATTTCAATTCTGCAAGTGTGTGTATGTAAAATAAAAAAGGAAGATATGCAAAGCAAAAAAAGT
ACCTTCCAACATTCTCCTTCTTGTGGCCTTACAAGCACGCAGCTGACGACAGATAGTTTCTTCA
ACCGCATTCAAGAGTAACAAGCCCTTGGCATCTTCTTCTCCACTAAAAGGAAGACCATATGTCA
TCGTAAAAAGATCCTCTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.1815782
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020