Detail information of BGIOSGA012174_circ_g.2


General Information
CircRNA Name BGIOSGA012174_circ_g.2
ID in PlantcircBase osi_circ_004659
Alias 3:7367844|7369509
Organism Oryza sativa ssp. indica
Position chr3: 7367844-7369509  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012174
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012174_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012174-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTATGACTTATTAAACAATGTTGGCGTCTATCGATTTCCAAGAGTTTCATGTGCTGCAGCTA
GTGCAGACCATGCAGACCTCGATCCTCATATCTCAGgattatcatgaggaacatccagaggtta
ctgtccttgacccaccaaatgccatcaatcatctgaataatcggcaatctatgcttgcagaagt
atctgatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTATCATGAGGAACATCCAGAGGTTACTGTCCTTGACCCACCAAATGCCATCAATCATCTGA
ATAATCGGCAATCTATGCTTGCAGAAGTATCTGATTTGAACTTATCCAGTTTCTATGGTAATCA
TGAAGCTTAACATGTATATTTATATGCTATAAAATGGATTCGTTATTTTACTTTCCATTTCTAA
TGTTTATAATGTTAGTTAGTGTCTGTTTAATTATCGAATATATTCACATGTCAGGGAAGCACTG
GTCATGTGGTGTAGTCGTAGGTACTCCACCTGCCAGGGTTCAAATCCTGATGCTCACGAATATT
ATGCACACCCAAGTGGGCTTTCACTAGAAACTTAGTGAGATCAGCGATTGTCGTTGGTTTCTGT
CTCTTAGAGTGTGTGTTAGGGGCGCATCAGTTGAGTTAGTGTGGTGCGCGCGCGTGTGCGTCTG
CCGTGTAGTCGCAAAAAAGAAAAATATATTCACATTTAAACTTCTGTCCTAGAATGGAAGAAAC
TTTTGCTTTCAAAAGCGATGTGCAGAATATTTATCCTTCTAAGATAAACAATATATATTTTCTA
TTCCTTGTGAACCTCAGGATTCAGGAATTTCCAATTAATGCTGCTATGTAATTCTTTCTTCAAA
CAAAAGAAATTTGTGTTAACTCTTAGAAATGCTGAAATTCCCAATAGAAACCCATAGATTTTTT
TGCTTTGCAGAGATTTCAAGGACAAATGTTGCTTGATTGGGAAACATTATTTCTTTGCAGCTGG
TTGTGAATACAATGTACCGAGATAGTAAAAGGCAGAATTCCAAAAGTGTATCATCAACTAAATC
TATTGAGGGCATATCTATTCATACCAATATATGATTGTTTATGCATTGAACCATTGCAGGAGAA
GTTTGCACTCCACGCCAACTGGTCATTATGAGAGATCCATCCTCTATACCAACCGCAGTTGCCA
TGGCTGGACTAACCTTGCCCTTGGGTAATTGGTCATAATCTACATCTTAAAACTATCCATTTCC
TCTAGATAAGAAAACATTGCCAAATCATGCGAATGTTTAAATACAGCGGAAAAATATTCAACAT
TTTTATTCCGGCAATATTTTTTCACCTGGCCATTCTCAGTTCGTTTTTGAACATGCGGTCTGTT
TTTCAGATAATATTTAAGCATGGTTCGTTGATAGTTAATTTTGGGAGATGTTCTCTTTTCATTC
TTGGAACTATTGAGCTTAGAAATTGTTTGATGCGAAGTGCTTCTGTCTATACAGTTGCGAAGCC
ATTGGTTGTTGATGGAACATCTAAATCCCACGAACTATCTCTTGCATATGATGAGGCATCCTTA
TCAATGCTTGATCCTCCTCTGGTCCTCCAGGAATTTGTGAACCATGGTAAGTTCTGTTCCCCCC
CTGTAACTGTAGTACTTTTGCATATCCTGAGACTTTTTCCTCCAACGGTAGAAGTTCGGACCTA
AACTATTCCCTCTACAGGTGGGATCCTCTTTAAGGTGTACATCATTGGTGAAACTATACAAGTT
GTACGGAGGTTTTCTCTTCCTGATGTTAACACTTATGACTTATTAAACAATGTTGGCGTCTATC
GATTTCCAAGAGTTTCATGTGCTGCAGCTAGTGCAGACCATGCAGACCTCGATCCTCATATCTC
AG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 7367905-7369473(-)
7367923-7367851(+)
7369430-7367851(+)
Potential amino acid sequence MIDGIWWVKDSNLWMFLMIILRYEDRGLHGLH*(-)
MLAEVSDLNLSSFYGEVCTPRQLVIMRDPSSIPTAVAMAGLTLPLVAKPLVVDGTSKSHELSLA
YDEASLSMLDPPLVLQEFVNHGGILFKVYIIGETIQVVRRFSLPDVNTYDLLNNVGVYRFPRVS
CAAASADHADLDPHISGLS*(+)
MLASIDFQEFHVLQLVQTMQTSILISQDYHEEHPEVTVLDPPNAINHLNNRQSMLAEVSDLNLS
SFYGEVCTPRQLVIMRDPSSIPTAVAMAGLTLPLVAKPLVVDGTSKSHELSLAYDEASLSMLDP
PLVLQEFVNHGGILFKVYIIGETIQVVRRFSLPDVNTYDLLNNVGVYRFPRVSCAAASADHADL
DPHISGLS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021