Detail information of Os03g0157300_circ_g.2


General Information
CircRNA Name Os03g0157300_circ_g.2
ID in PlantcircBase osa_circ_018009
Alias NA
Organism Oryza sativa
Position chr3: 3069464-3073229  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os03g0157300
Parent gene annotation Ca2+-permeable mechanosensitive channel, Regulation of plasma me
mbrane Ca2+ influx, ROS generation induced by hypo-osmotic stres
s (Os03t0157300-01);Protein of unknown function Cys-rich family
protein. (Os03t0157300-02)
Parent gene strand +
Alternative splicing Os03g0157300_circ_g.1 Os03g0157300_circ_g.3 Os03g0157300_circ_g.4 Os03g0157300_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0157300-01:6
Os03t0157300-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGACAGGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTC
AAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATGgagaggaggagaagaggggggaacggaa
atctcagctgctgcgtcagtctcgcagatctgctccgttgagctgctgtttcacggaatcacca
tgggtgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGAGGAGGAGAAGAGGGGGGAACGGAAATCTCAGCTGCTGCGTCAGTCTCGCAGATCTGCTCC
GTTGAGCTGCTGTTTCACGGAATCACCATGGGTGGAAATCATCGCCATGGGTGGTAGGATTGGT
TGGGTGTCGCCGATCTTCTCGCTTCACGCCAACTAATCGAGTGAATTGTGGGAAGAAGAAGAAG
AAGAAGAAGCCGAGTAGACGACGGCAATGGCGTCGTGGGAGAACCTCGGGGATGTGGCGACCGT
CGTGCAGCTGACGGGGCTCGACGCGGTGCGGCTCATCTCCATGATCGTGAAGGCGGCGTCGACG
GCGCGGCTGCACAAGCGCAACTGCCGCCGGTTCGCGCAGCATCTGAAGCTCATCGGCGGCCTGC
TGGAGCAGCTGCGGGTGTCGGAGCTCAAGAAGTACCCGGAGACGCGGGAGCCGCTGGAGCAGCT
CGAGGACGCGCTCCGCCGCGCCTACCTGCTCGTCCACTCCTGCCAGGACCGCTCCTACCTCTAC
CTCCTCGCCATGGGCTGGAACATCGTGTACCAGTTCCGCAAGGCGCAGAACGAGATCGACAACT
ACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGGGTCGGTAAAACCAT
ATCCCTTTCAGCTTCTCTCATCAGTGTTCATTTGTTTAATCGTGTAGTTGAGTGTTAGACTAGT
AGCCTGGGCATGTAGGCTTTTAAGAAATGTTGGTTGCATCATTCTTTGATTCTAAAGTATGGTA
TATGGAATGTTTGCTTTTGAAATTGGATGGAAAATGATTTGTCTTGGATTCTTGGTGGTTTTCC
TGTATGGTCTCATGGGTTCTTTGTTTTCTGTTGGTTGGTGTGACCCAAAGGATTCTATTTTAGA
ATCTATCTTCTGAATATAACCGACGCTGCAACCTTTTGGTGCTCCATCATTTTCATCGTCTATA
TAATCTGATTTTTTTGTTGGTGTGAATGTGACCCAAAGGATTGTGAAGGTATATGTATATGCTA
GGAAACTGATTTTTTTTTTAGCTCCAGCACAGTGAGCTCAATCACTAATCATGCCACTTGGGAC
TAGTGATCTGCATCGGATATCATGTTTATTTACTCCTATACTTGTCATCTTTGCTTCACAATCC
TTTTTTTTCAGGAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGATGA
AGACAAGGAGGTTCAAGATGCTCTGTTAAACCCTGATCCAAGTACAAATCCTACGGTAGTGCTC
AAGAAGACTCTGTCATGCTCTTATCCAAACTTGCCATTTAACGAAGCGCTTCGAAAGGAAAGTG
AGAAGCTCCAAGTAGAACTTCAAAGATCACAAAGCAACATGGATATGGGCCAATGTGAGGTTAT
TCAACACCTCCTAGGAGTGACTAAAACTGTGGCAAGTTCGATTCCAGAGAAATGTGCCACTCCT
AAGGTTTCTGAAAAAGCTGACTCTAATCACACAAAAGTCAGTGAAGATAGTGCAAAAACATATC
ATGATGACTCTCCAAAGAAGCAAAAGGATGCCTGCACTGCACCACGGTTAGTAAGTTTAACTAG
TTTCTTTCGGTGACTATCTTCTTATGATGTGGGTTGCAGTGGTAAAAAAGGCAGTGTATAAAAC
CTTTTCTCATTAAGTAACATTAACCTGAACAATTACTATGGCCATTTCTGGGTAAATCATGAAA
AATGTGCGCATTCTTCCTTATTTTAGAGGTGTAAGTCTTGTATACTCAACTGTGTGATCCAACA
AAAGAGAACTTCACTATGTTCTGTTCTAGACTTGAAATAGAAATTTTGTTATGTGCTTATGCCC
CTCAAAATGCGTATGCACATTATAAAAATTTTGATAGTTCCTATGGTGCATATCTTTCTCAGAA
GTTCTCCGCCATCTTCTTATGGCCATGATCTGGTCTCAAGCAGAGGATCATACAGCGACGAGTG
GCATGCAGATTTGCTTGGTTGCTGTTCAGAGCCATCTTTGTGTATGTCCATTTACCTTCTCTTT
GGATGCGTGATTTAATGATTTCCCTATGGTGTTTAGATGCCATTTTTAGCACAGCTGTTCGGTT
ATGCATCTGTTTGTTTTCACAAGAATTTATCCAATTTAGTCATTCTATAAGTATGATTTATGTC
CTTAGACATATCCTTTTTCTACATATATGAGTTGATCAATACTTTGTACTGATGTTTTGGGGGA
GTAGGATCATGCAACTATGTAAAAGGATCATCTTATAACTAATGGTCTTGGAGTATTATGTACA
GCGACTTAAGAAGATATCTTGTTATTTATACTTGCTTAGCTGCAAGAAACTACCGCCTTTCAAA
AATGAAAAATAATGGTTAAGATTTACTAGATAATAGTAAAGTGGATGAAACAACAATCGCCATT
TTAGCCTCTTTTCCTTGCTGATTACTGTTGAGATGCTGGTAGCCAATTACTGAAGAAGTAGTAA
TGCTATGATAGCAGCTAGCAGGGTCAAAGATGATCAGTTCTACTAAAAAATTATATAGAAATTA
GTCTTGTTTTGTCTTTCCTCGGTACTTGTCAATTATATGGAAATATTTGTGACATATTTTTTTT
TGCCATTTATTTACATACTGTGATAGCACAGGTTTGAGAACATTAGTGCTTATTAATTATATGG
AAATATCTGTTACATATTTTGCTTGCTATTTATTACTTGTTGTGATAACACAGGTTTGAGAACA
TTCTTTTTCCCCTGTGGAACATTCTCAAAGATTGCTTCAATTGCGAAGAACAGGCCCATGTGTA
AGAATATTTCCCTGACAATAATCATCATGTTGAGAGTTGATAATTTTTGTTCCTCCTAGCATTT
TTCTTCATTTCCCTGAAAATAGTCATCATGTATTATTTGCCTCCACTTGTTTTACTATGGTGCT
GACTTTTCTGCATTTGGATAGTAATTTCCAAGGGTGTGCAGTATCTTGTTTATGTTAGCTAGTG
TTAGACCAAACAGATTGGCCTTGCATGTTCTCTGCATCTTGAGTTCTAAAGTTTGTTGTCAACA
AAATTCTCCATCAAAATGCTTCCAAATAGGATTCTATGCCACATTTTCTGTGGACTGAATTACT
TATGTAATCTGAAAGGCTGGTTGACACTGATAAAAAAAAATTTCAGCATCGTCGGAAGCATGCA
ATGATATTATGGCATATTCCCTGATATTATCCTGCTGTTGTTACACTTGCTGTGTGAGGAGAAA
GCTTCGTCAAAAGCTAAATATTGCGGTAAATTTTCCTGTCCCTTCATATCTGTTGTCAATTGAT
TTTTTTTCCTGCTTCTCTAAAGTAGAAGTGCTTCATTCTGACCCTACAATGTGAAACTGAGCTA
CCTCTGGAATTGTTACAGCTCCATGTTATACACTATGGGTCATTTCAGAACTGATTAACTGAAC
TAGACTATAACTGGGGCTATGGGTCATTTTGGCTAAAGGATTATAAATGAAACTAACTTAACAA
AATGTCTGTCTGTCCATTGCTAATGCAGAGGTTTGTTAAAAGATTGGGTAGAGTTTTATCTGAA
AGAATTACCATGCACACTATGGAGCGTTCGTATATCCTAAGAGCCTTTTATGTTACTTAAAACT
CTGTTTATGTTATGCCGCTGACAGGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTT
GTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG
Conservation Information
Conserved circRNAs NA
PMCS 0.11796246
Functional Information
Coding potential Y
Potential coding position 3073228-3069529(+)
3069683-3069624(+)
Potential amino acid sequence MERRRRGGNGNLSCCVSLADLLR*(+)
MASWENLGDVATVVQLTGLDAVRLISMIVKAASTARLHKRNCRRFAQHLKLIGGLLEQLRVSEL
KKYPETREPLEQLEDALRRAYLLVHSCQDRSYLYLLAMGWNIVYQFRKAQNEIDNYLRLVPLIT
LVDNARVRERMEYIERDQCEYSFDDEDKEVQDALLNPDPSTNPTVVLKKTLSCSYPNLPFNEAL
RKESEKLQVELQRSQSNMDMGQCEVIQHLLGVTKTVASSIPEKCATPKVSEKADSNHTKVSEDS
AKTYHDDSPKKQKDACTAPRSSPPSSYGHDLVSSRGSYSDEWHADLLGCCSEPSLCLRTFFFPC
GTFSKIASIAKNRPMSSSEACNDIMAYSLILSCCCYTCCVRRKLRQKLNIAGGCIDDFLSHLMC
CCCALVQEWREVEIRGAYGEEEKRGERKSQLLRQSRRSAPLSCCFTESPWVEIIAMGGRIGWVS
PIFSLHAN*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017