Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d035030_circ_g.1 |
ID in PlantcircBase | zma_circ_008871 |
Alias | zma_circ_0002450 |
Organism | Zea mays |
Position | chr6: 2408322-2409040 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d035030 |
Parent gene annotation |
Phosphoinositide phosphatase SAC1 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d035030_T002:3 Zm00001d035030_T008:3 Zm00001d035030_T004:3 Zm00001d035030_T012:3 Zm00001d035030_T001:3 Zm00001d035030_T011:3 Zm00001d035030_T005:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.241424536 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2408537-2408336(+) 2408962-2408336(+) 2408383-2408986(-) 2408403-2409024(-) |
Potential amino acid sequence |
MAPDAAEIQLKSPNWLFGQRKHTETISTARVAPVENVNEGNRDESNVSLCGELIWLSSSVESCE EDIFRRYLAFTTADVENGWYGGTLLYDRDENSGAYRHYSELCQFCTWK*(+) MAGMAEHCYMTEMKTAGLTGTILSSASSAPGNNVFVGSGAALNPGTILSPVPACKEDFSRKKLT SFDKLIERTCSSIRNVRLHCDADLKPSGGVGTSGMAPDAAEIQLKSPNWLFGQRKHTETISTAR VAPVENVNEGNRDESNVSLCGELIWLSSSVESCEEDIFRRYLAFTTADVENGWYGGTLLYDRDE NSGAYRHYSELCQFCTWK*(+) MVPGFNAAPDPTNTLFPGAELAELRIVPVSPAVFISVI*(-) MLGQGSIWSQGSMQLQTPRTHYFQVQNWQSSE*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |