Detail information of BGIOSGA016802_circ_igg.1


General Information
CircRNA Name BGIOSGA016802_circ_igg.1
ID in PlantcircBase osi_circ_014588
Alias Chr04:26976499_26980693(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 25126132-25130321  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGGCAAGAAATTCAGAACTCATGAAGAAGCGCGTAGTTTCTTCAACTTCTATGCATATCAAG
TGGGATTTTCTGTAGTCATCACACACCACTACAAATcctgcatgatggctgctgggtttggtct
tgatgctggataggatagttgagatccatggagtcagaaccaaactaaaattaagagaacacaa
gcatgaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCATGATGGCTGCTGGGTTTGGTCTTGATGCTGGATAGGATAGTTGAGATCCATGGAGTCA
GAACCAAACTAAAATTAAGAGAACACAAGCATGAATTAGGACATGTTCCACAGTAAACTTCAGT
TACAAACCAATTGGTATAGGGCACAATCCATATGAAAAACAAATATATGCACAAGGGATAAATA
ATGAAAAACAAGTTCAGAAACTAAAAAACAACCCACCAAACCAATTTCACATTCATATATGCTC
AAAAGTAGAAATTTACATTGCATTTGCACTAAAATTACATTTGTAAAAACAGTACATATGGCAT
GTAAGTGCACTGTAATTTTAGTACAATTGCACTGTAAATTTGGGTAACATAATTTTTTGCATTA
TTGAAGTGTAATTGATAAAATGATGCTTGATTAGTAATCTGTCATACAGAACACCTGCATATTT
CACTCCTCAATACTAGGTATTCACTCATTTAAGACAAATGGCTGGATAAAATTTTAGTGATTTC
CAATTTGGAACTAGCAAAATAGATTCATAGTTCTCTATATATTTGGCTTAGAATATAGACCATA
GATCACATTTAATACTCTTATATAGAACATTCAGGAATTATATAGGAGCAGTACCTTCCAATAA
TCCATTCAAATCAAATCTAGGATTAAAAGAATATCACTCCAAGAACATCATAGTAAACAATCTA
GGGTACTCAATATCTTGGAAATGTGTGATGACTCGATCTGCCATATAAACAATCTTAGTACATG
CAGAGCCCGATCCACAATATTTTAGTACTTATTTAACTAATACAACTACAAGTATATATACATT
ATGCAACAGTTACATCATCATTGAGAATCATTTATGCACATCAAATCTATATCTCTAGATCAGG
ATAGATTCATTAGATCAACATGACTAGATGATACACATGGAATACAAAAATTACTGTCCTACAT
AACTAAAATTACATTTGTAAATTCAGGTCATTGTGTATGTAAGTGTACTGTAATTTTTATACAT
TTGTTGTGTAAGTTATAATGTATTACTCTATGATGTATTGCTGTATTCTAATACATTCAATAAA
ATTTTGCAGAAATGAAGTCATATGCAGATCCTGTCAAAATTAGCATCAGGTAGAACAAGGAATC
TGGGGAGACAAACAAGGAAAAACTACAATTAGGTATTTTCTTTTAAAAAAATCACATACTATGT
TGATCTGAACATCATGTAGAAATTTAAAAAAAATATCATAGTACAACTTTGAAAAAAAATCACA
GGAAAATGTTCAGCTGCAGGGTGAAGGATGCAAAATATTAAAAAATACATTAAGGGTTAAACAC
TACTACTTTCACACCATTGTTATCAAAACTAGAAAAGGGTTAAACACTCAAAACACATTAACAT
AGCACCCAATCTTAAATAGCACTATCCATGCTGCCATACATATGCAAAATCAAACACTGGAAGT
AGAAATTACAGTGATTTGAAATTAAAATTAAAATTAGAAATTACAGTTGTAAAAACAATTTATA
TTGCGTGTAACTTCACTGTAATTTTTGTGAATAAGCTATGTAAATAAATATGTAATACTTAACA
TTCTAGTAAGATGGTTTCAGGGACATGTATACTAATTTATTCCATGAATTTGCAGGAATGAAAT
TTACTGAACCAGTCAAGGGTGGATCCATGGAGAAAAAAGGTATTGAAACACTACACTACTTATT
CAAGTACAAAACATCTCACAATTTCAAAAACTTCAACTACATAGCCAAATATAATAATCACATA
TATACCACTCCTTTCACTTGCCACTCAATACCAAACACACAGAAATACAATCACATATGTGCCT
AAATACAGAAATTTTAAAAATATATGCAAAACCATTCTAGGCTAACAATCATAATTTGACCTAA
ATATTATGGCAAAAAATTACAGTGCTTTATATCTAAAATTACATTTGAAAGTTCAGTTGATACA
ACATGTAATAAATCCAAAAAGTATAAAACTTACAGTGATTTATAACTAAAATTACAATTGTAAA
AACAGTTTATATGACAAGTAAGTGCACTACAAATGTGGTTCAGTTTATAACTAAAATTACAACA
ATTTATGACTAAAATTAGATTTGTAAATTCAGTTTATTTGTCATGTAAGTACACTATAATTTTG
GTATAATTGAAGTGTAACATGTATGTGTATTGTAATTTGGTGCAACCACAAGTATTTGAAAAAT
ATATTCATGTTTGACATAAAACATGCAAATGCCACACTGAACATATACTGCTAAAGCTCAATAC
ATGCTAAAAAATACAAATGATTCTCAAAAGACATACCTATTTAACAAATCAGTACCTCATATAC
TTCATTTCTCCCATGGCACAGGTCGTGAAGCAATACAAGAAGGAGAAACAATTAGACAACAATC
AGAGGAGAGCAAAAATGATGCAATGCAGATTGAAGGAAGCAAAAGAAACATCAACATGGCTCCA
GGTCAGAAAATATATTTGAATAAATTTTGCTCTAAGAATAAATAAAGGTAACTACAATTATGTT
TGTTGATTCTAACATATGCTCTAATGATTTATATAAATTTTACAGGGAGGCTGGCATATGCAAG
AAGTCCTAATATCTACAATTTGCAAGAGGGTGAAGGAAGCAGCAGCAAAATGCCCCATTTAGGT
ACTAACTAAGTTTCTAAACTACCAAGTCGACAAGCTCCAACAAAACAATTGCAACATACACTGA
TCTAATATTCTGATCTTTATCTTTTTCAAAATGCAGGATGCAGGAAAATACAACACGTAGGAAA
AAACTTCAATTCACCAGAATTAAGCAATACCATAGGAACAATTGCATCAGAAGTTGTCAATTAT
GGAGGACAAATGCTATATGATCAATTCACATTGCTAAACTTAGACCCAAGACAGGTACACTAAT
CAAAAAGCATAGATGTAGCATATAAAACTATTTTATACATGCAGTTATAAACTAATAAACATAT
AACTGTGCAGGAAGGACAGTTGAGCTACACTAACCTCATACACCAAATAATTCATAGTCCAACT
GTCACCATACAGCAACAAACAGTAAGCATATCAACTTACATTATATACCTGACAAAAAAAAGAG
AAAATAATAAATGAATTGATATGTAAACTATGAATATGCAGGGAGGACAAGAAAGCTTTACAAG
TCTACTTCGGACACCAGCATTTGATGTAAGAATAAAAAATTATGAATACTTATGTAACAATTCC
CTAATTAGTCATTTAAATCAGTACTAACTACTGTTTTTTGATATTGCAGAATTCAATGATCTTA
ACAACCAGTAGATTTTCTCCAGAACTAGAAGAGCAGCAGGATATGACATATGAGCAACACATAT
CAACTACACACTGGAGCTATGAAGAATTTGATCAGATTTACAACAACAAATACATCACACCTTT
TGCTGAGGTGATTTTAGCTAAAATATTGACTTCAAATTGTTTAGACTTAAGCTATTTTGCACTA
TTGATTAACAAGAACTTATTGTTTGGCAGAATACAACAGCAAGAATAGAAGAGCTGTATCAATC
AAAAAATAGCCATTTCACTACAAAGGTAAAATAAACTTTGCAACAAAAAAACCCTATATCAGCA
AGAATTATCAAGATATAAGTATAACCATCACAAAACATGCAGGACAATGAAGTGGATATGGCGA
CTGAAAATGATGATTATGTGGAGCTGAATTCAGATGATGAAAATGAGTAGGTATACTATCACTT
ATTTGAAAAACACAATACTTATTCAAATAATGTTAGGAGGATAGATCTGCAATGGTGCTGACAT
ATTACTTGAACAAAATTTTCAGGAAGGGACTTCAAACATGCTTCAGCAAGATTCCCAAATCAAT
ACAATCACAGCAATTGAACAAGTAGAGCAACATGTTGGGCAAGCAGAAACAACAAGTGAGACAA
AAGCTACCTCAGCAGAGGACAATGACACTATCAATGAAGAAGACATTAACAACTACTTGGCTAA
TGAAGAAGATAGCCAAGATAACACTCCTGTAGTAATTGACAAGAAACACATACCTTGCATTGGC
AAGAAATTCAGAACTCATGAAGAAGCGCGTAGTTTCTTCAACTTCTATGCATATCAAGTGGGAT
TTTCTGTAGTCATCACACACCACTACAAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021