Detail information of Os04g0568751_circ_ig.2


General Information
CircRNA Name Os04g0568751_circ_ig.2
ID in PlantcircBase osa_circ_024931
Alias Os_ciR9515
Organism Oryza sativa
Position chr4: 28578443-28581241  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0568751_circ_ig.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAACTGTAGGCACAATGAGTTTCCTTTTTGCAAATGGGTTCACTGATTCTGCATAACGTGTCA
AGACTGGAGCACTGGGAAGCAAGGTAGCTCTAGGAActtgatcatagcaagatcttgatgcatc
aagtccacatctgtctccaaaaatgctcgggatgggcctccatccagtaggatccaaataagcc
cttcctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGATCATAGCAAGATCTTGATGCATCAAGTCCACATCTGTCTCCAAAAATGCTCGGGATGGG
CCTCCATCCAGTAGGATCCAAATAAGCCCTTCCTAATTAAATCCACATTTCATAAGCTTTTACT
CTACCTTAAATGAATAAAGCTTTTACTCCACAATGGAACATTGATAGAAAAATATATACCATGC
ATGCTTGAAATACTCTCAGCACAACTTGGTCACGTAGGGCATCAACAATCAGATCACATACCTG
GTCAAGAACCTACAACATAGTTCCAGTTCATCCATTAATAAAACTCAAAATTAAGGATAAAATG
TAGGTAGCCAGGTATCTCAAGTATGGTTTCCTACTTGATCAATAGTAGGGATAAACATCTCCAT
ACGTGCACTTTCAACACTAGCACGGTACAAGGAGAAAAGTAACGAGTCCCGCATATCCCAGAAT
ACAGCCCTTGTTCCTGCAAAGTATTGCTTTAGAAACTCATGTGATTGATATATACAATATTGTG
GATGTTTTCTTATTCTTTCTCCATTCCAGATGAATTAATATCTGGCACTGTTGGTGAACAAATG
TATGGAATTCAAAATTTGCAGCAATATTATATTATCAGGATCTAATTCTAATAAATATCATGTA
CTTTAGTAAACCATATCTTAATTTAACCAAAGCAGCTCAAGAACAAATAGTGCAACTATACGTT
TCAACATACAACAGCAACTTCATATTCTTGGCAAACCTTTGCTCTTCCAATGATGAATATACAA
CTGAATGAATTCAAAATAGTATCAATGAATTAGCAGCAATTTGACAGCAATTCTAGCAGTAAAC
TACCATGGATTCTGAAGAACTAAATGCAAGCATAACAAAATTTCTAACAGCCTACCTGCCCAAT
TGTCCAAACAAATCTCTAGTATGAAAATGACTGACTACAGTGTACTTAAAAGTTAAATACACTT
GCTTAAAGTTCATTCCATGGATAAGAGCGTAAATTGTAAAGAGCATAAACTATCTAGAATCTTA
GTAGCTCACCAATGAAGTTCAGGATTCTGTCAGTTGTACTCACTGCAGTCCTTCGCACATCATC
AAATATTGTAAACAACTCATCGATTGATTCTTCAGAAGATAAGTTTTTTGGGAGAGTTCGTCCA
CTAGCAATGCAAGACAAATAGTCTAGCAATCCCACAGCTACAACAAACAAAGCAGAGGGATAAA
GGATAATCATTCATAAGCTTGAGCTTGAGGGATTGAAAAACTCAGCTGAAGGATTAAGCATAGT
ATCAATCCAATTAGCAAGCTATCAAAGCTGTATCTGTTGGAACTTGGGAGGTTTAGACTGTCTA
TTATCGCCAGGTTTTTATAGGCACAGCATTGTTGCCTGTTTAAGTTAAAAATATATGAAAGAAT
TAATGCAGATTCTCCTGAAGGTTTTTCCTCCCAGTTCATAGTCAAACTCCCACCCCAAAACTCT
CCCTCATTACCCATGCCATCATGGCCTTCCACTCTTCCATAGTACAGTAGATACCTTGCTATGA
GCTAGGAATAACACTTCACATGTTCCAATAGTATGTAACTCTTGCCCACAGTCTGCAACAAAGT
CCTGGGAATCCATGAATAGAATGATCTTGCAGTTTCTCAAAACAAATGTGCCTAGTTTTGTGTA
TTCCTCTAGAGTAGCATGTCAAACCATATATTAAGCTTGAGTAGGCTTCACTGTTTCAAGCTCC
AATTTAGAGTTTTAGACCTATCCTAACAGACCCCTACTGCCACTAAATGGTATCCCTGTTTTTT
AGGTGATGGAAGATTACGTTGTACCTTACGACCCTTGCATCAACTAGTGATGTGTGCAGCCATT
ACAAGTATCCTATTGTTCTGTATGATTTCAAAATGGAGTGGAATTCAAGTAAGGGGGAAAATGC
CATAAACTGGTAACCCAAGTTAAGGAATCCTTGGTGAGTATGAAATTTGGCTAGCCAGAACCTA
AAAACATACACCAAGCTATACCAAATCAATCCAATCCATGGATCTTGATACCAAACGTTCAAGA
GAATTGACATCTCACAGGCTATAACTGCATTTGACGAAGTAGAAAGATAGTAGATAGCAAAGTA
GCCCTTTTGGGAAGCCTTTGCTGCTTTTGCTTGAAATCTACCATGCTGGTTGTGTATGATATGG
GAGTTGTATGCCATCAGACAAATATGGGACCACCACTACCAGAAGCAAGCCATAAAATAGAAAA
TAGCTCCAACTGCTTTCTGAGAGCCCATTCAACATGGAGATCAATAACGCGGATTTACAACTTA
TCAACCAATATAAAAAGTAATAACTGTGTGCAATAGAATAACACGGAAGGACATCTTTGTACAG
GTGGAAACACATTTAGACAGATGGTTACCTGACTGAACTGAGACCCAAGATTGTTTGATACCTT
CTTCTATGTTATCGAGCTGATCCCTAATGAACTGCATAATTTAGAGAATATGAGGATCACAATA
GAACTCGCCCTATGGTGTGGTTATTGACTAAGAGCAGTAGCTTATTTCATCTATTTGACTTCAG
ACTCAAACATACCAACTCATTCAGAAAAGGGACGGAGGGAAAATGTAGTCAGGTCAAAAGACTC
ACTTGAAGAGTGTTGAGTTTCGCACATAATTTAGGAACCGTCAAATTGTTCAATTTATTAGCCA
CCTTCTCTTCAGGAACTGTAGGCACAATGAGTTTCCTTTTTGCAAATGGGTTCACTGATTCTGC
ATAACGTGTCAAGACTGGAGCACTGGGAAGCAAGGTAGCTCTAGGAA
Conservation Information
Conserved circRNAs osi_circ_014682
PMCS 0.226794123
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015