Detail information of Zm00001d010974_circ_g.2


General Information
CircRNA Name Zm00001d010974_circ_g.2
ID in PlantcircBase zma_circ_002797
Alias circ2764
Organism Zea mays
Position chr8: 135536485-135541067  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d010974
Parent gene annotation E3 SUMO-protein ligase SIZ1
Parent gene strand -
Alternative splicing Zm00001d010974_circ_g.1 Zm00001d010974_circ_g.3 Zm00001d010974_circ_g.4
Support reads 11
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered Zm00001d010974_T072:9
Zm00001d010974_T001:9
Zm00001d010974_T060:10
Zm00001d010974_T031:9
Zm00001d010974_T005:9
Zm00001d010974_T050:9
Zm00001d010974_T018:9
Zm00001d010974_T057:10
Zm00001d010974_T014:9
Zm00001d010974_T008:9
Zm00001d010974_T041:9
Zm00001d010974_T048:9
Zm00001d010974_T021:9
Zm00001d010974_T047:9
Zm00001d010974_T055:9
Zm00001d010974_T033:9
Zm00001d010974_T025:9
Zm00001d010974_T038:9
Zm00001d010974_T007:9
Zm00001d010974_T044:9
Zm00001d010974_T027:9
Zm00001d010974_T037:8
Zm00001d010974_T075:8
Zm00001d010974_T059:10
Zm00001d010974_T040:9
Zm00001d010974_T012:10
Zm00001d010974_T045:8
Zm00001d010974_T051:9
Zm00001d010974_T017:8
Zm00001d010974_T026:9
Zm00001d010974_T010:9
Zm00001d010974_T002:9
Zm00001d010974_T042:9
Zm00001d010974_T022:8
Zm00001d010974_T024:8
Zm00001d010974_T065:8
Zm00001d010974_T034:9
Zm00001d010974_T023:9
Zm00001d010974_T029:9
Zm00001d010974_T049:8
Zm00001d010974_T061:3
Zm00001d010974_T053:9
Zm00001d010974_T030:9
Zm00001d010974_T062:10
Zm00001d010974_T015:10
Zm00001d010974_T028:9
Zm00001d010974_T036:8
Zm00001d010974_T035:8
Zm00001d010974_T020:9
Zm00001d010974_T004:9
Zm00001d010974_T063:9
Zm00001d010974_T043:9
Zm00001d010974_T056:9
Zm00001d010974_T006:9
Zm00001d010974_T052:9
Zm00001d010974_T064:10
Zm00001d010974_T046:9
Zm00001d010974_T016:9
Zm00001d010974_T013:9
Zm00001d010974_T039:9
Zm00001d010974_T054:8
Zm00001d010974_T003:9
Zm00001d010974_T019:10
Zm00001d010974_T011:10
Zm00001d010974_T058:10
Zm00001d010974_T032:9
Zm00001d010974_T009:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCAAAACACTTGCTGACCTGCTTCTTTCCTTGCTTCGGTAACCCCAGCTGATTTAAGATATC
TTTGAGCTCCTTTATTCTAAAATACGCAAGTTTATCccagtggcccatcatcccgcccatttat
ccctagtaactgagaaccgggcctggtcattactcgtacaggaatacctgaacaaacagaaata
aatatcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGTGGCCCATCATCCCGCCCATTTATCCCTAGTAACTGAGAACCGGGCCTGGTCATTACTCG
TACAGGAATACCTGAACAAACAGAAATAAATATCAGACTGGCAATCCCTTAATTTCAAGTATGA
ATGTAAATTAAACTTGTATGGCTCAGATATATGTATCTATACAGCATATAAGCCAAGATTTGTG
CCACAATGCATTTTAATAAATCCAAGTTGTACAAGAAAATTTAAACATTACCGTTCACTTGCAA
TTCTGCATATTGAGGCCATTGCATCCTGAACTGGACTTTGTCATTTATAAGGATGCACCAAACC
TGTCCACAGACCCACAACACAATCGGTAGTTAACAGGACTGTGCAACAGAACCAGTGAGTGTAT
CCAAGTGTTTTTCTTTGTTGAATAGGACATGATAAACCTTAATTCATCAAATCGATACCTTTTG
ACAGCACTTAATGTGCAATACTCACGTCTATATCGCACACACAATTTACAAATGATTTAAATAG
ATAACTCATAATTAAGGTAGACATGAAAAATCAAAGACATTTGATGTTAGACAAAGGTCATAAT
AATCCGTAGTTATTTTCCTTAAATGTACCATGCATGAACACTATGTTAAAGAGGTTGATTCAAT
GACAAAGTTCGGTGACTCCAAGTGACCTAATCTCACATACATCAATGTTATCCTAAGGTTTATT
TATGGCATGATTTATGGCATAGCATAATCACCAATGTACTATACGTGAACTCTATATTAGAGAA
AAAAACATAATCATCTGCAGTTAAGATTTATTTATGGGTAGCAGCATCGTGACATTAATAAAGT
GTGCAAGATTTTTATCAGGATCTAGGCAAATGAAACTTAGGTTATGGAGGAGAGAGTAAACCTG
GAGATCATATTCTTGTCTCTGAACTGTTTCTCTATCTGCTCGGGAAAGTTGGAAAGTCTTCTCC
ACAATTTGAGGTACACTTGCTCTAGAGATATGAAGGTTTCACAAGGACACATTTATGCATCAGC
AACACAGTAACATCAATGCAGATAATATACAAACTAAAATAGCAGAATAGTTAAGTCTACTCAG
ATGGCATGCTATTGGGCATGTTTGGTTCAGCTTTTTTCTAAGGAACTTTTCTGAGAATCTAGCT
GTGGAAAGAATCTGAGTATCGTGGAGATTACATGCGGAGGAAGGTAAAAGAGTCCATATGGTTT
AGGATGTAGAAAGTGACGGTTTCCTACTATCGCAACGACTTAGCCGATTCTGTGTTCATGTTGA
TTTTGTATGGTTTTGACTAAAGTGATTTTCATACAAGTGGGCTGAAAAGATGAGCGTTTGGCAG
TCTGCAGCAGCTTCTGGTGGCCAGAAGCTGAAAAAAGTTGCAACAAACAGGGCCATTATCTAGT
ATATGGGCCAAAATCACATCTATTGACCACCTTATCTTGCGCAGGAGAACTGCGCGTCATTATG
TTAAGAAGAAAAAAAAAGTCCAAAAGAAGACCAGTACAAACCGCCAAGAAAAAGGCAGCCAAGG
ATAAAAAAAACAAAGGCTATTACATAGAACATAGAAACTGAAATGACCTTCTCCCCTTCCACTA
TAAAGAACTACGGCCACATGCCTCTAAGGCCTGCAGCCCCTGCTAAACACCAAAGCCTAGCATC
CTCTTTTATTGACCACCTTATGACGGCATATATCATATGCTGCATGCTTTGTCAGACACTCAGA
CTGATAACACATCTTAACAATTAAGAACAGACCAATGAACATTGTACTTTTAAAGAGGTGGAAA
ATTCTCACACCAATGTTCTACATGCAAATGAGCACTAGTGTTCTACATTCATATCAATGAGCAA
AAACTTGTATTAGCAATCAACAAGACCGCAAGGGTTATCATATCAAATCTAACAGTGAAATTTA
ATCACTAACCAAAGATTCTGAACTGGAGTATATATGGCTGTTGTTGAAGATATTAGTGTCTGCC
GATTGGGTAACAAGGATTTATTTATGTACAGCACAATATCAGTGGCATAATATAGATATCCATA
TGGTTAAAATAATAATTCCTGACAACAATAGAGCGACAATTTCCCCTCAACTAAAATTAACATT
CACTATTACACATGTAATGTAGTATTGACAACTGCCCCCACTCCACCCACCAACAAAAAAATAA
AAAATATAAACAATTATACAAATGCACAATAGGTAAGGAAATGATTATTTATAAGATAAAATAT
GGCCACCACAAGAAGTTCCATTATATACCCACCCATCATTTCCAACACCAGATGACATAAATTT
CACAGGTAGTAATGGATTTCCGGTAGTCACCCAAAACCTGCAAATACGAAGGGTGGAATTAAAC
AATGAGAACAGAATTGCAGACGATAAGAAATTCTAAGTAAAGTTGTTCAAGTGCAATGCCAACT
TCAGAGTGCCAACACAGATTTACATGTATCATCAGCAGGTTTTGTTCATAAAAAACAAAAAAAT
ACATTCGAGGATCTAACCAAAAGGCATAGTAACTTCAATTGCATAGAAAACTAGAAACATCAAG
CATTTTAGTCTTCAATAATTAGGCTACTTTTACATGTTACATTTGTTCCAAAAGGAAATAAACA
ATCAGCATGTTCTACCCAAGCAAATAGAAGAAAAAGCTTAGGTCTTAAGGCGCACTATCACCTC
AGGCAAAGACAACAAAGAGTGCCGCTTAACCTACGGGGTGATCATACAAGTATCCAGCTTGAAA
AATCACAGAATGGGTGTAACAGTTCACATAAATACATTCAAAAGGTTCAGCGCATAACCCAGTT
AAAAATGGATAGCTCAATAGCATCCATATGTGTACCAAGTACGGACACAAAAACATATCAAAAT
AACAGCTTACAGCATTCCATCAGACAACCAAGCAACCAGTAGCACGGGCTGTTAAACAAGAGGT
CATGGGATCAATTACCAGTTTACCAAAACAATCAATTGTAGGAATAGGTAGAACAAAAGAGGGT
TCTAACAAACCCTGTGTGAGTGAAAAAAAGGCACCCTAAAAAAGGTAAACCATACAGGAAAGGG
AAACCATATCACAGTTCATTCGCAACATCTTAGCTATAGCAGGACATTCCAAGGGCCACTCATG
AAAAAAAACATAGTGAAACAAAGAAAGCCAAACAGACTAGAGCAGAACATACGGGTCTGCCCGT
TTCAGTCGGCACAGTTCACAATAAAAATGAGGTGGAATATCAGGGCCAGCACCCTCCGTGGGCT
TATCTGGAATGAGTACGCAGGTAATATGCTGCCACACCTGGCATTTGCCATCTTCGCACTGCAG
GAAACAAGACAGCAAGATAAAAGATTAACAAGGCGCATGAAACCAAAAGAAACTGGTTGCGGTT
AAGAGAAACTGTGTTCACGTCATATGTGCCTTTCAAATGAAAACAAAATACATGCACATATATA
AAAGGGTTACCTTAATCATATTGTCATTTAGCAATGTGCTATTGCAAAGGCAGCGGACCTTAGT
ATCCACATGGTAGAAGTCAGGCGCTTCCTCTTTGGGCCTGAAATGACTGAAATCTGATCCACTG
TGGCTTCTAGAGGGAAGGTCAGGAGCACATACTTGCATTTTCCTGCTAATAAAAGCACCGAGGC
ACAAGAAGGAAATAAGTCAACAACTTCATGTGACGTAGTCAACTCTCTGGTATGTATTCTTGTA
CTGAACATTGAGAAACAGATGGAATGGAACCTGTATGTGTCATCAACAACTTTTGCCACCGCCT
CCCTTGTAAGAGCATTTTTCCTTCCCCATCCATGATGATGTTGACCTGCAATAAGCAAATAGAG
CTTAAGAGCAAGATTTCATGGAAAGAACAAACTTAGGGATTCAGAAGAACAAAATCTGAACTAG
TTGATGCTGTATAACAGAAGAGATCTTTTCTTGACCAATCATCAGCTCAAGGACAAATAAATAA
ATGGCCCATATCAAACTACAATGGCACAAACAGATCTACTGGCTTGAGCACAACTGAAAAGTAA
TACTAACCAATATTGAAGCATAAAAAATGCAGCAGTTAAAGACAACAATATTTGGGGGGTGGGG
GCAAAGACCAACATACCTTGCTCATCTGATAAAATAGCCAATACCCTGTCAACAAGGTCCTGCG
ATCAACGATTACGAAAACAGATCAGATACCATCAAGTGCAAAGCTGAGGCACGTGCAGTGAAGA
TGAGATTCTGAACGTGTTCAAGGAAACAAAAAAAAAGAAGATAGTTCTGATTTCTGATATTGCA
ACACTGATGAATTGAGGCTTGTCCTGCAAACCCATGGTTACTGCCAAAACAAGTTGTGCACAGC
ACGACAGGAGACAGACCCAACAATGATGTACGGGCAGATGACTAGCTCACCCTGGAGGCTCATA
TGACATGCCTCTAATCAGTTGTGATCCTACATATCCGGGAGAACAAAGTGCCCCACAGCAAAAA
TAAGAGCAAAACACTTGCTGACCTGCTTCTTTCCTTGCTTCGGTAACCCCAGCTGATTTAAGAT
ATCTTTGAGCTCCTTTATTCTAAAATACGCAAGTTTATC
Conservation Information
Conserved circRNAs NA
PMCS 0.09246503
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b