Plant Circular RNA Database

Detail information of Csa3G116870_circ_g.3

			
						 General Information
					
						CircRNA Name
						Csa3G116870_circ_g.3
					
						ID in PlantcircBase
						csa_circ_001453
					
						Alias
						Chr3:6345526_6349506
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr3: 6345526-6349506  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Csa3G116870						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							Csa3G116870_circ_g.1 Csa3G116870_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa3G116870.1:7

General Information
CircRNA Name	Csa3G116870_circ_g.3
ID in PlantcircBase	csa_circ_001453
Alias	Chr3:6345526_6349506
Organism	Cucumis sativus
Position	chrChr3: 6345526-6349506 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	e-circRNA
Identification method	CIRI2
Parent gene	Csa3G116870
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	Csa3G116870_circ_g.1 Csa3G116870_circ_g.2
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa3G116870.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATCACTGTAACCAGCAAGAAGCAGGTCCCCTTGCTGACTAAAGCATAGAGATGTTGCTGGTGC
AGTTGATTTATCTCCTTGTGATCCAAGCAGTATCATctgattaaaatctaaggaagaaatatcc
atgtgaagaacacactgttctacacgctgcaaccatcctttgtggctataatgctctaccaaag
cttgcata

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGATTAAAATCTAAGGAAGAAATATCCATGTGAAGAACACACTGTTCTACACGCTGCAACCAT
CCTTTGTGGCTATAATGCTCTACCAAAGCTTGCATAATCTGAAAGAAACCAAAAAATACAATCA
GTTGACCTTTGTTCTTTTAATGGAAGAATACTATTACATTGATTATCAATACCTCCGGAGGCAG
CGATCCAAGCATGTCCTTTAAAATATATGGTTCTAGAAGCTCCAAAAATGTATCTAAAACAAGA
AAAGAAGTGAATACCCATCTTTTTGTAATTTCATATTTCTATGGAATGAAGGAATCTGTGTTTC
TTATCAAGATATTTGTGTGTGTATGTGTAACCATGACAGAAGAAAATAAGACAAAGCACTTCAA
GAAGCAACAAAAATATAATCAACAAATCCAAGGAAAGAACGAATCATCATTAACCCATTTATTT
TATCAAGTGCACCCAGGAAAAAAAAATTGCAAGAATTTACATCTTTTAAATGGAAGAAATTATT
AAGCGCATGATATAGAAGAATATTCATGCTTCTGTCGAGCATTCAGAACAGAGATCATTCTTTG
GAAGAAATAATACTTTTCATTAAAAGTTGTGAAACATCGACATACAGGATCATAATTCTTTAAC
TGTAAGTTATTATAACAATAAGAAATAAATAGTTACATAAACAACCAACTATGATCTGAGCAAA
AGTTTGCAACCCAGTGATTGAAGACTGGAACAAGTATCGAAACAACAACAATAATTAAAAATCC
ATTCCTGTCAAAGGTCTTCACAAGGGTGAATGCTCACTACTCCAGTGAGAAAAAAAAAGACAAA
TGAAAAGCACTAAGATGCAACAAAATAGTATGACAACAGAGATAAAATGTGCTACAGAAACTTC
ATTCCATGAAGCCATATGGACGACAGCCCAAGCCCTTAAAAATTTCTACCACTGAAAACTTAAC
CAAGGACCATCCCCTTAAAAGGCCTCCTGATTTCTCAAAGAACTCCACAAAAAACCATCCAATT
TCCTTGTAAATTCATTAACCATATTAGCACTCTCCTTCTTCGGAAGACTCCTTTCACTCTAACC
ATAATTGGTCTGGTCATAGATATTTGAAACCCTAATTGAATTTCATCATCTAGCCACTAACGTA
ATGAAGCAATTAATAGAATGAATGCATAACAATTTGAACTCCCAACAACCTACAACGAAACAAT
TAATATGAAGTTAAGTTATATGTTCAATACCTCTCTGTTGAACCCCCACAAATTTGGAGAAAAT
TTCATCAAAGAGAATATCAGTCCTCGAGATGTGGACACAAAACTCAACTGCAACTCCACCAACA
CGATTGTATTGCTCTTTTATTTCAGAATGTGCAGAATGGCTTTCAATCGTCATATCATCCAGTT
TTTCATTCTTTTCAATTTGGTTACAGAAAGCCACTGATATATATGAAAACACCTCATCCACGTA
TGATAACAGCAACTCAATCAGAAAGGGCATTACCAACTCCTGCAAAGATTCCAACGACCTGGGG
AGATCGATAACACCATGAGCATGGCCGTCATAAATGGTTATTGCCATGCTAAGAGCACTCATCC
AGTCCCCTGCTTTCCGTAGAACCTGAACCCGCTCCTTCCATGGAAGGAGACGGGAAATAACAAG
ATGCATAGGTCCCAATACATATATAGAAGCTCCTCTAACAGCCACGCAATTGTGATATGCCTTC
TCAGGGTTGCCCAAAATGTTAGCAAAGTGGGTGTGATATGCAATGAAATCTTCCTTAACAAAGC
CATCTACAAATATACTTGTTTGGTGAATCATAGTTCCATCCTTCTCAAATAAGAAGAGTTGTCC
TGTTACTGTGAGAATGACAAGAACCTGTAGAGTTTATAGAATTTCTGATCAAATCTTGATGCAA
ACGTCTAAATCCTTGCTACTAATGAAGCCTCCAGTTAAAACTGGAATTCTACTTTTTCACCTTC
AACAAGAACCAAACCAATTTGAAGATTTGGGTGTGCAAGATCTTAGATTTGGCTAATTTTGAGA
GAGAGTTTAAGTTTTTCTTTGTATTTAGTTTTCTACTAATGTATTGTCTTTGAGTGGCTTTGAT
TAGCTCATTATTTTCAGTTCAATTTCGTTTTTGGGTTTCCAACATAAATTATAGTATTTGTTTA
AGTTTTAGCTTGTTTTCGTTTAAAGAAAAAATAAGAAACCAAACGGATCTTATTAAATGTAATC
TGATGGTTTTTGTTGGATCTATAAATCCCCAAATTTTCTGCTATGTACTATGTTTAAAAATGAA
AATAAGCACCAAGAAGCCCAACGTCAAAGTAACCTTTACAACTGCACTGAACTATTAAGCAAAC
TAGCAGTTGTAGTGAGGACAGATTTAGAAACAATAAACTAACCTTCTTCTTTTCACTTTTTTTC
TTTTTTTTTTCCTCCTGATAAGAACGAACAACCTTTAAAAAATTACCTGGTCATCTAACCAGAC
AACACCTATGGCTGCACTCTCGAGGGACCACTTGCCACATACTTTAAGCTCTGTTTTCACCAAC
TTTGCTACCTGCACCATTTTATCCCAGGCAATTGCAAGCAACGAAACCCTTTCAACTGCTTCAG
AAGGTGAAGTTTCTGCCATAATTTAAATCTTTAAGGCCAGAAATAAAAACTAAATGCTCAAATA
CTTTATTTATAAACAGAAATTTTCATTGATTTGATGAAATTATAAGGTTTTACAAGCCAAAGTG
TTACAAAAACATAAGGAATGGAGTATGGCTGGAGAAGATAGCGCCTACGAAAGTTCTTTGTAAC
TATTTCTTTTCCATAGTTTGTGTCGATGAAGATGTTTTTGTAATTCTTTGGCTTGTAAAACCTT
ATAAGATGATGAATTGAAATATCACTTCAAAAATGTGATCCAGCCTGAATCTCCTTTTTCTGAT
ATGAACTTTTACAAATAGTATATTATTTTTCTGATATGAAACAAATACTATGTTCATTTCACAA
ATGATTGATGCCGTGATCATTTTAAGGGCAGTAAATTCTTACCAAAAGACTGCGAACATTTCCA
GGCAGTGTAAGGCATAGAACCTTCTCGAATTCCATCTGGCTTAGAGAGCTGAGCATAAACTTCC
ACAGTGGGACTCAATCTTACCTGAAAATCTCAAGTGAATTCAAGAAGTTCCAGAACAGGCAACG
TAAAAATATTATCATATTAATAATGTAAAGATAAAATTGCACTATTATCAAGGGTCCCATACCA
CCAGAGCAGTTTGATGGGTAGCGAATATGACAACTCCTTCTTCAACCAAAGATGAACCTTCGTT
GAAAAGTTTCCATCCTGAATCTCCTCCAACCACCCCTCCCATCATGCTCCCAATACTGCTGGTT
GAAACTGCGACATTTGAAAGAGTTGGTGGCAAGGAACTACCAACGAATTCATTCAAAAGAAGTG
CCGAAGCTGATAGAACAGTCCCCGTTTTTTGCCCATCAAGAAGACACTAATTCAGTAAATTAAC
ACCAGATCACAATTCAGAACAATTAATTTCTTCGGTGTCATGAACCCTCACAAAATAAGCATTT
TATTTGCAACAACCAACAAAATTAAGATCATTCTAATGGCAACAGAACCAATATAATGAACTTG
ATGCTGTAATTAATTTTCTACCTGAGTTTTACTGGAGAATCTATTTAGCAAAGGAACCACTGAG
AACGTATGTAACAAAACCAGACCCTTGCTATCACCAGTAACTGCTTTAAATTGTCGAGTAACCT
GAGCCTCCTGCCCAAGGAACAGTGAATGAACAACTGGTGATGCGTGTTCTCCAGAAATAACCTT
CGCAGCCGATGCCCTCAACACATCCCAGACTGTAATATGACCATCACTGTAACCAGCAAGAAGC
AGGTCCCCTTGCTGACTAAAGCATAGAGATGTTGCTGGTGCAGTTGATTTATCTCCTTGTGATC
CAAGCAGTATCAT
						
					

			
		

Sequences
Splice junction sequence	CATCACTGTAACCAGCAAGAAGCAGGTCCCCTTGCTGACTAAAGCATAGAGATGTTGCTGGTGC AGTTGATTTATCTCCTTGTGATCCAAGCAGTATCATctgattaaaatctaaggaagaaatatcc atgtgaagaacacactgttctacacgctgcaaccatcctttgtggctataatgctctaccaaag cttgcata
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGATTAAAATCTAAGGAAGAAATATCCATGTGAAGAACACACTGTTCTACACGCTGCAACCAT CCTTTGTGGCTATAATGCTCTACCAAAGCTTGCATAATCTGAAAGAAACCAAAAAATACAATCA GTTGACCTTTGTTCTTTTAATGGAAGAATACTATTACATTGATTATCAATACCTCCGGAGGCAG CGATCCAAGCATGTCCTTTAAAATATATGGTTCTAGAAGCTCCAAAAATGTATCTAAAACAAGA AAAGAAGTGAATACCCATCTTTTTGTAATTTCATATTTCTATGGAATGAAGGAATCTGTGTTTC TTATCAAGATATTTGTGTGTGTATGTGTAACCATGACAGAAGAAAATAAGACAAAGCACTTCAA GAAGCAACAAAAATATAATCAACAAATCCAAGGAAAGAACGAATCATCATTAACCCATTTATTT TATCAAGTGCACCCAGGAAAAAAAAATTGCAAGAATTTACATCTTTTAAATGGAAGAAATTATT AAGCGCATGATATAGAAGAATATTCATGCTTCTGTCGAGCATTCAGAACAGAGATCATTCTTTG GAAGAAATAATACTTTTCATTAAAAGTTGTGAAACATCGACATACAGGATCATAATTCTTTAAC TGTAAGTTATTATAACAATAAGAAATAAATAGTTACATAAACAACCAACTATGATCTGAGCAAA AGTTTGCAACCCAGTGATTGAAGACTGGAACAAGTATCGAAACAACAACAATAATTAAAAATCC ATTCCTGTCAAAGGTCTTCACAAGGGTGAATGCTCACTACTCCAGTGAGAAAAAAAAAGACAAA TGAAAAGCACTAAGATGCAACAAAATAGTATGACAACAGAGATAAAATGTGCTACAGAAACTTC ATTCCATGAAGCCATATGGACGACAGCCCAAGCCCTTAAAAATTTCTACCACTGAAAACTTAAC CAAGGACCATCCCCTTAAAAGGCCTCCTGATTTCTCAAAGAACTCCACAAAAAACCATCCAATT TCCTTGTAAATTCATTAACCATATTAGCACTCTCCTTCTTCGGAAGACTCCTTTCACTCTAACC ATAATTGGTCTGGTCATAGATATTTGAAACCCTAATTGAATTTCATCATCTAGCCACTAACGTA ATGAAGCAATTAATAGAATGAATGCATAACAATTTGAACTCCCAACAACCTACAACGAAACAAT TAATATGAAGTTAAGTTATATGTTCAATACCTCTCTGTTGAACCCCCACAAATTTGGAGAAAAT TTCATCAAAGAGAATATCAGTCCTCGAGATGTGGACACAAAACTCAACTGCAACTCCACCAACA CGATTGTATTGCTCTTTTATTTCAGAATGTGCAGAATGGCTTTCAATCGTCATATCATCCAGTT TTTCATTCTTTTCAATTTGGTTACAGAAAGCCACTGATATATATGAAAACACCTCATCCACGTA TGATAACAGCAACTCAATCAGAAAGGGCATTACCAACTCCTGCAAAGATTCCAACGACCTGGGG AGATCGATAACACCATGAGCATGGCCGTCATAAATGGTTATTGCCATGCTAAGAGCACTCATCC AGTCCCCTGCTTTCCGTAGAACCTGAACCCGCTCCTTCCATGGAAGGAGACGGGAAATAACAAG ATGCATAGGTCCCAATACATATATAGAAGCTCCTCTAACAGCCACGCAATTGTGATATGCCTTC TCAGGGTTGCCCAAAATGTTAGCAAAGTGGGTGTGATATGCAATGAAATCTTCCTTAACAAAGC CATCTACAAATATACTTGTTTGGTGAATCATAGTTCCATCCTTCTCAAATAAGAAGAGTTGTCC TGTTACTGTGAGAATGACAAGAACCTGTAGAGTTTATAGAATTTCTGATCAAATCTTGATGCAA ACGTCTAAATCCTTGCTACTAATGAAGCCTCCAGTTAAAACTGGAATTCTACTTTTTCACCTTC AACAAGAACCAAACCAATTTGAAGATTTGGGTGTGCAAGATCTTAGATTTGGCTAATTTTGAGA GAGAGTTTAAGTTTTTCTTTGTATTTAGTTTTCTACTAATGTATTGTCTTTGAGTGGCTTTGAT TAGCTCATTATTTTCAGTTCAATTTCGTTTTTGGGTTTCCAACATAAATTATAGTATTTGTTTA AGTTTTAGCTTGTTTTCGTTTAAAGAAAAAATAAGAAACCAAACGGATCTTATTAAATGTAATC TGATGGTTTTTGTTGGATCTATAAATCCCCAAATTTTCTGCTATGTACTATGTTTAAAAATGAA AATAAGCACCAAGAAGCCCAACGTCAAAGTAACCTTTACAACTGCACTGAACTATTAAGCAAAC TAGCAGTTGTAGTGAGGACAGATTTAGAAACAATAAACTAACCTTCTTCTTTTCACTTTTTTTC TTTTTTTTTTCCTCCTGATAAGAACGAACAACCTTTAAAAAATTACCTGGTCATCTAACCAGAC AACACCTATGGCTGCACTCTCGAGGGACCACTTGCCACATACTTTAAGCTCTGTTTTCACCAAC TTTGCTACCTGCACCATTTTATCCCAGGCAATTGCAAGCAACGAAACCCTTTCAACTGCTTCAG AAGGTGAAGTTTCTGCCATAATTTAAATCTTTAAGGCCAGAAATAAAAACTAAATGCTCAAATA CTTTATTTATAAACAGAAATTTTCATTGATTTGATGAAATTATAAGGTTTTACAAGCCAAAGTG TTACAAAAACATAAGGAATGGAGTATGGCTGGAGAAGATAGCGCCTACGAAAGTTCTTTGTAAC TATTTCTTTTCCATAGTTTGTGTCGATGAAGATGTTTTTGTAATTCTTTGGCTTGTAAAACCTT ATAAGATGATGAATTGAAATATCACTTCAAAAATGTGATCCAGCCTGAATCTCCTTTTTCTGAT ATGAACTTTTACAAATAGTATATTATTTTTCTGATATGAAACAAATACTATGTTCATTTCACAA ATGATTGATGCCGTGATCATTTTAAGGGCAGTAAATTCTTACCAAAAGACTGCGAACATTTCCA GGCAGTGTAAGGCATAGAACCTTCTCGAATTCCATCTGGCTTAGAGAGCTGAGCATAAACTTCC ACAGTGGGACTCAATCTTACCTGAAAATCTCAAGTGAATTCAAGAAGTTCCAGAACAGGCAACG TAAAAATATTATCATATTAATAATGTAAAGATAAAATTGCACTATTATCAAGGGTCCCATACCA CCAGAGCAGTTTGATGGGTAGCGAATATGACAACTCCTTCTTCAACCAAAGATGAACCTTCGTT GAAAAGTTTCCATCCTGAATCTCCTCCAACCACCCCTCCCATCATGCTCCCAATACTGCTGGTT GAAACTGCGACATTTGAAAGAGTTGGTGGCAAGGAACTACCAACGAATTCATTCAAAAGAAGTG CCGAAGCTGATAGAACAGTCCCCGTTTTTTGCCCATCAAGAAGACACTAATTCAGTAAATTAAC ACCAGATCACAATTCAGAACAATTAATTTCTTCGGTGTCATGAACCCTCACAAAATAAGCATTT TATTTGCAACAACCAACAAAATTAAGATCATTCTAATGGCAACAGAACCAATATAATGAACTTG ATGCTGTAATTAATTTTCTACCTGAGTTTTACTGGAGAATCTATTTAGCAAAGGAACCACTGAG AACGTATGTAACAAAACCAGACCCTTGCTATCACCAGTAACTGCTTTAAATTGTCGAGTAACCT GAGCCTCCTGCCCAAGGAACAGTGAATGAACAACTGGTGATGCGTGTTCTCCAGAAATAACCTT CGCAGCCGATGCCCTCAACACATCCCAGACTGTAATATGACCATCACTGTAACCAGCAAGAAGC AGGTCCCCTTGCTGACTAAAGCATAGAGATGTTGCTGGTGCAGTTGATTTATCTCCTTGTGATC CAAGCAGTATCAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.1146127

Conservation Information
Conserved circRNAs	NA
PMCS	0.1146127

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							6349508-6345528(-)
						
					

						Potential amino acid sequence
						
							MILLGSQGDKSTAPATSLCFSQQGDLLLAGYSDGHITVWDVLRASAAKVISGEHASPVVHSLFL
GQEAQVTRQFKAVTGDSKGLVLLHTFSVVPLLNRFSSKTQCLLDGQKTGTVLSASALLLNEFVG
SSLPPTLSNVAVSTSSIGSMMGGVVGGDSGWKLFNEGSSLVEEGVVIFATHQTALVVRLSPTVE
VYAQLSKPDGIREGSMPYTAWKCSQSFETSPSEAVERVSLLAIAWDKMVQVAKLVKTELKVCGK
WSLESAAIGVVWLDDQVLVILTVTGQLFLFEKDGTMIHQTSIFVDGFVKEDFIAYHTHFANILG
NPEKAYHNCVAVRGASIYVLGPMHLVISRLLPWKERVQVLRKAGDWMSALSMAITIYDGHAHGV
IDLPRSLESLQELVMPFLIELLLSYVDEVFSYISVAFCNQIEKNEKLDDMTIESHSAHSEIKEQ
YNRVGGVAVEFCVHISRTDILFDEIFSKFVGVQQRDTFLELLEPYILKDMLGSLPPEIMQALVE
HYSHKGWLQRVEQCVLHMDISSLDFNQMILLGSQGDKSTAPATSLCFSQQGDLLLAGYSDGHIT
VWDVLRASAAKVISGEHASPVVHSLFLGQEAQVTRQFKAVTGDSKGLVLLHTFSVVPLLNRFSS
KTQCLLDGQKTGTVLSASALLLNEFVGSSLPPTLSNVAVSTSSIGSMMGGVVGGDSGWKLFNEG
SSLVEEGVVIFATHQTALVVRLSPTVEVYAQLSKPDGIREGSMPYTAWKCSQSFETSPSEAVER
VSLLAIAWDKMVQVAKLVKTELKVCGKWSLESAAIGVVWLDDQVLVILTVTGQLFLFEKDGTMI
HQTSIFVDGFVKEDFIAYHTHFANILGNPEKAYHNCVAVRGASIYVLGPMHLVISRLLPWKERV
QVLRKAGDWMSALSMAITIYDGHAHGVIDLPRSLESLQELVMPFLIELLLSYVDEVFSYISVAF
CNQIEKNEKLDDMTIESHSAHSEIKEQYNRVGGVAVEFCVHISRTDILFDEIFSKFVGVQQRDT
FLELLEPYILKDMLGSLPPEIMQALVEHYSHKGWLQRVEQCVLHMDISSLDFNQMILLGSQGDK
STAPATSLCFSQQGDLLLAGYSDGHITVWDVLRASAAKVISGEHASPVVHSLFLGQEAQVTRQF
KAVTGDSKGLVLLHTFSVVPLLNRFSSKTQCLLDGQKTGTVLSASALLLNEFVGSSLPPTLSNV
AVSTSSIGSMMGGVVGGDSGWKLFNEGSSLVEEGVVIFATHQTALVVRLSPTVEVYAQLSKPDG
IREGSMPYTAWKCSQSFETSPSEAVERVSLLAIAWDKMVQVAKLVKTELKVCGKWSLESAAIGV
VWLDDQVLVILTVTGQLFLFEKDGTMIHQTSIFVDGFVKEDFIAYHTHFANILGNPEKAYHNCV
AVRGASIYVLGPMHLVISRLLPWKERVQVLRKAGDWMSALSMAITIYDGHAHGVIDLPRSLESL
QELVMPFLIELLLSYVDEVFSYISVAFCNQIEKNEKLDDMTIESHSAHSEIKEQYNRVGGVAVE
FCVHISRTDILFDEIFSKFVGVQQRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSHKGWLQR
VEQCVLHMDISSLDFNQMILLGSQGDKSTAPATSLCFSQQGDLLLAGYSDGHITVWDVLRASAA
KVISGEHASPVVHSLFLGQEAQVTRQFKAVTGDSKGLVLLHTFSVVPLLNRFSSKTQCLLDGQK
TGTVLSASALLLNEFVGSSLPPTLSNVAVSTSSIGSMMGGVVGGDSGWKLFNEGSSLVEEGVVI
FATHQTALVVRLSPTVEVYAQLSKPDGIREGSMPYTAWKCSQSFETSPSEAVERVSLLAIAWDK
MVQVAKLVKTELKVCGKWSLESAAIGVVWLDDQVLVILTVTGQLFLFEKDGTMIHQTSIFVDGF
VKEDFIAYHTHFANILGNPEKAYHNCVAVRGASIYVLGPMHLVISRLLPWKERVQVLRKAGDWM
SALSMAITIYDGHAHGVIDLPRSLESLQELVMPFLIELLLSYVDEVFSYISVAFCNQIEKNEKL
DDMTIESHSAHSEIKEQYNRVGGVAVEFCVHISRTDILFDEIFSKFVGVQQRDTFLELLEPYIL
KDMLGSLPPEIMQALVEHYSHKGWLQRVEQCVLHMDISSLDFNQ
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						responsive to salt stress in root
					

			
		

Functional Information
Coding potential	Y
Potential coding position	6349508-6345528(-)
Potential amino acid sequence	MILLGSQGDKSTAPATSLCFSQQGDLLLAGYSDGHITVWDVLRASAAKVISGEHASPVVHSLFL GQEAQVTRQFKAVTGDSKGLVLLHTFSVVPLLNRFSSKTQCLLDGQKTGTVLSASALLLNEFVG SSLPPTLSNVAVSTSSIGSMMGGVVGGDSGWKLFNEGSSLVEEGVVIFATHQTALVVRLSPTVE VYAQLSKPDGIREGSMPYTAWKCSQSFETSPSEAVERVSLLAIAWDKMVQVAKLVKTELKVCGK WSLESAAIGVVWLDDQVLVILTVTGQLFLFEKDGTMIHQTSIFVDGFVKEDFIAYHTHFANILG NPEKAYHNCVAVRGASIYVLGPMHLVISRLLPWKERVQVLRKAGDWMSALSMAITIYDGHAHGV IDLPRSLESLQELVMPFLIELLLSYVDEVFSYISVAFCNQIEKNEKLDDMTIESHSAHSEIKEQ YNRVGGVAVEFCVHISRTDILFDEIFSKFVGVQQRDTFLELLEPYILKDMLGSLPPEIMQALVE HYSHKGWLQRVEQCVLHMDISSLDFNQMILLGSQGDKSTAPATSLCFSQQGDLLLAGYSDGHIT VWDVLRASAAKVISGEHASPVVHSLFLGQEAQVTRQFKAVTGDSKGLVLLHTFSVVPLLNRFSS KTQCLLDGQKTGTVLSASALLLNEFVGSSLPPTLSNVAVSTSSIGSMMGGVVGGDSGWKLFNEG SSLVEEGVVIFATHQTALVVRLSPTVEVYAQLSKPDGIREGSMPYTAWKCSQSFETSPSEAVER VSLLAIAWDKMVQVAKLVKTELKVCGKWSLESAAIGVVWLDDQVLVILTVTGQLFLFEKDGTMI HQTSIFVDGFVKEDFIAYHTHFANILGNPEKAYHNCVAVRGASIYVLGPMHLVISRLLPWKERV QVLRKAGDWMSALSMAITIYDGHAHGVIDLPRSLESLQELVMPFLIELLLSYVDEVFSYISVAF CNQIEKNEKLDDMTIESHSAHSEIKEQYNRVGGVAVEFCVHISRTDILFDEIFSKFVGVQQRDT FLELLEPYILKDMLGSLPPEIMQALVEHYSHKGWLQRVEQCVLHMDISSLDFNQMILLGSQGDK STAPATSLCFSQQGDLLLAGYSDGHITVWDVLRASAAKVISGEHASPVVHSLFLGQEAQVTRQF KAVTGDSKGLVLLHTFSVVPLLNRFSSKTQCLLDGQKTGTVLSASALLLNEFVGSSLPPTLSNV AVSTSSIGSMMGGVVGGDSGWKLFNEGSSLVEEGVVIFATHQTALVVRLSPTVEVYAQLSKPDG IREGSMPYTAWKCSQSFETSPSEAVERVSLLAIAWDKMVQVAKLVKTELKVCGKWSLESAAIGV VWLDDQVLVILTVTGQLFLFEKDGTMIHQTSIFVDGFVKEDFIAYHTHFANILGNPEKAYHNCV AVRGASIYVLGPMHLVISRLLPWKERVQVLRKAGDWMSALSMAITIYDGHAHGVIDLPRSLESL QELVMPFLIELLLSYVDEVFSYISVAFCNQIEKNEKLDDMTIESHSAHSEIKEQYNRVGGVAVE FCVHISRTDILFDEIFSKFVGVQQRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSHKGWLQR VEQCVLHMDISSLDFNQMILLGSQGDKSTAPATSLCFSQQGDLLLAGYSDGHITVWDVLRASAA KVISGEHASPVVHSLFLGQEAQVTRQFKAVTGDSKGLVLLHTFSVVPLLNRFSSKTQCLLDGQK TGTVLSASALLLNEFVGSSLPPTLSNVAVSTSSIGSMMGGVVGGDSGWKLFNEGSSLVEEGVVI FATHQTALVVRLSPTVEVYAQLSKPDGIREGSMPYTAWKCSQSFETSPSEAVERVSLLAIAWDK MVQVAKLVKTELKVCGKWSLESAAIGVVWLDDQVLVILTVTGQLFLFEKDGTMIHQTSIFVDGF VKEDFIAYHTHFANILGNPEKAYHNCVAVRGASIYVLGPMHLVISRLLPWKERVQVLRKAGDWM SALSMAITIYDGHAHGVIDLPRSLESLQELVMPFLIELLLSYVDEVFSYISVAFCNQIEKNEKL DDMTIESHSAHSEIKEQYNRVGGVAVEFCVHISRTDILFDEIFSKFVGVQQRDTFLELLEPYIL KDMLGSLPPEIMQALVEHYSHKGWLQRVEQCVLHMDISSLDFNQ
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Csa3G116870_circ_g.3

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