Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009330_circ_g.2 |
ID in PlantcircBase | zma_circ_009600 |
Alias | Zm08circ00024 |
Organism | Zea mays |
Position | chr8: 56636844-56637708 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d009330 |
Parent gene annotation |
Protein LNK2 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d009330_T001:3 Zm00001d009330_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.154403671 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
56637494-56636855(+) 56637570-56637147(+) 56637530-56636846(-) |
Potential amino acid sequence |
MCTCVTCSLLFHPLMSILNTCRLFSDGSNTSHLFLIVLANPGTNYRVIFCTFRTRHNMVITLIE FSPYCIPYRNWD*(+) MAAILATSSSLFLRTLELTIVLSSAPLGQGTIWSSHSLNSAHIASLTGTGIDSTAVSIKFEDAE RKSLSLATISLPNMESLWLNRRSKSSKPPILPQSQSRKLLLFSS*(+) MEKQTASHTSAHISATQIDMESWPDLPSLNPTLDRNYSDDNIASTYLDFCAATSLQEVTRNSTE QLDGKSEVFGNDQEEKSNSFLDCDWGNIGGFDDFDRLFSHSDSIFGNEIVANDSDFLSASSNLM DTAVLSIPVPVRDAIWAEFNECDDHIVPCPKGAEDNTIVSSRVRKNNEEEVASIAAITEQSAGV QNGHQGMEKQTASHTSAHISATQIDMESWPDLPSLNPTLDRNYSDDNIASTYLDFCAATSLQEV TRNSTEQLDGKSEVFGNDQEEKSNSFLDCDWGNIGGFDDFDRLFSHSDSIFGNEIVANDSDFLS ASSNLMDTAVLSIPVPVRDAIWAEFNECDDHIVPCPKGAEDNTIVSSRVRKNNEEEVASIAAIT EQSAGVQNGHQGMEKQTASHTSAHISATQIDMESWPDLPSLNPTLDRNYSDDNIASTYLDFCAA TSLQEVTRNSTEQLDGKSEVFGNDQEEKSNSFLDCDWGNIGGFDDFDRLFSHSDSIFGNEIVAN DSDFLSASSNLMDTAVLSIPVPVRDAIWAEFNECDDHIVPCPKGAEDNTIVSSRVRKNNEEEVA SIAAITEQSAGVQNGHQGMEKQTASHTSAHISATQIDMESWPDLPSLNPTLDRNYSDDNIASTY LDFCAATSLQEVTRNSTEQLDGKSEVFGNDQEEKSNSFLDCDWGNIGGFDDFDRLFSHSDSIFG NEIVANDSDFLSASSNLMDTAVLSIPVP(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |