Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G10130_circ_g.14 |
ID in PlantcircBase | ath_circ_001818 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 3320567-3321460 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder |
Parent gene | AT1G10130 |
Parent gene annotation |
Calcium-transporting ATPase 3, endoplasmic reticulum-type |
Parent gene strand | + |
Alternative splicing | AT1G10130_circ_g.15 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G10130.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.192554095 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3320985-3321457(+) |
Potential amino acid sequence |
MNFETCALRETTYPCSIFEDRHPSTVAMTVLVVVEMFNALNNLSENQSLLVITPRSNLWLVGSI ILTMLLHVLILYVHPLAVLFSVTPLSWAEWTAVLYLSFPVGEAVVTGWLFFRYLVIGVYVGLAT VAGFIWWFVYSDGGPKLTYSELMNFETCALRETTYPCSIFEDRHPSTVAMTVLVVVEMFNALNN LSENQSLLVITPRSNLWLVGSIILTMLLHVLILYVHPLAVLFSVTPLSWAEWTAVLYLSFPVGE AVVTGWLFFRYLVIGVYVGLATVAGFIWWFVYSDGGPKLTYSELMNFETCALRETTYPCSIFED RHPSTVAMTVLVVVEMFNALNNLSENQSLLVITPRSNLWLVGSIILTMLLHVLILYVHPLAVLF SVTPLSWAEWTAVLYLSFPVGEAVVTGWLFFRYLVIGVYVGLATVAGFIWWFVYSDGGPKLTYS ELMNFETCALRETTYPCSIFEDRHPSTVAMTVLVVVEMFNALNNLSENQSLLVITPRSNLWLVG SIILTMLLHVLILYVHPLAVLFSVTPLSWAEWTAVLYLSFP(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |