Detail information of Os10g0516350_circ_g.5


General Information
CircRNA Name Os10g0516350_circ_g.5
ID in PlantcircBase osa_circ_007672
Alias NA
Organism Oryza sativa
Position chr10: 19911989-19912169  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os10g0516350
Parent gene annotation Hypothetical gene. (Os10t0516350-00)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AA-AG
Number of exons covered NA:0
Os10t0516350-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGATCTCCTTAAAGTGGCACATTATTCTCAACCAAAAATGGTAGATCATGTGTGCTAACTG
TAGAGTATGCTGAGAAGCCATGTACTgtatctctttacgtgatgctttgagctttatgttgtag
tgctgcctgttcacttttatgtcaattactttacatttctttcagagtacaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATCTCTTTACGTGATGCTTTGAGCTTTATGTTGTAGTGCTGCCTGTTCACTTTTATGTCAAT
TACTTTACATTTCTTTCAGAGTACACATTTTGATCTCCTTAAAGTGGCACATTATTCTCAACCA
AAAATGGTAGATCATGTGTGCTAACTGTAGAGTATGCTGAGAAGCCATGTACT
Conservation Information
Conserved circRNAs osi_circ_008607
PMCS 0.11233849
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017