Detail information of BGIOSGA016790_circ_g.2


General Information
CircRNA Name BGIOSGA016790_circ_g.2
ID in PlantcircBase osi_circ_014582
Alias Chr04:26873408_26876075(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 25018014-25020681  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016790
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016790_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016790-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCATACCCTTC
TTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAGgaaaacagcatggcttgctatgttctac
atgtgtatacccactggaatagcggttggctatgtttatggtggtttggtaagtcttatgctac
acatgatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAACAGCATGGCTTGCTATGTTCTACATGTGTATACCCACTGGAATAGCGGTTGGCTATGTT
TATGGTGGTTTGGTAAGTCTTATGCTACACATGATCTTTCTTCTATTTTTTTAGTTGTCAAGTT
AAGCAGTTTTGAGTAACAATTGCATTTTCGATATTAACTTACCTCATGCCCTCTTCTATTCAAA
ATCACATCAGGTTGGAAATAGTCTGCACTGGCGTGCTGCTTTCTGGGGAGAGTCGATTTTGATG
CTTCCTTTTGTTATTCTGGGCTTTGTAATAAAGCCATTAGAGCTCAAAGGTGTGGTTTATTTTG
TGTCACGAGAGTATAAAGCACTACTGTTTATATAGCACTCCATTAATTGTTACGGTATCTTTGG
TTCTATCATGATTTTATTCCCTTCTTTTTATTCTTTTTGGCGGGCGTTTTGTGCAACAGGATTT
AATCACAGTGTGAAGACAAAAGAGTATGGTGAGATGCTCAATCCAGAGCGGCAAGATGAGACAA
AGCAGGGTGCGTCTATTGGAGTTGATGGTCTTGCAGAAACGCTACCACACAAGTTCTCCATGTA
AGCACCTCCTCCCTAAAATATTTGTTTTACTTCAGATGTTGATTCACTTATTTAATGACCATAT
TACTTCAGATATTTGATAAAATGAGTTTTGATTGTTGATCATGTGAACATAATCAAATTGTGGA
ATGTGTTCACTTGTTTGACATAGTGACATGCTGTGTTCGTTCTTTAATGTTAATTGCAAATACT
ATCAGCTCATGCACTTTTAATAGAAAATAATATTCTGAACATTCCTCACTTCAATCATGCAGCT
CAAGTTTTGGGAAGAAAGTTCTAACCGAAATCAAACACTTTATGAAAGATATGAAAGAACTGCT
CCAAGAGAAAGTCTATGTGATCAATGTCTTAGGTCAGATCTTTCATACATTATGCAATTTCTGA
ACTTAATTCTGATTAAGCTGATCTGTTGTAGTCCCCCCTGTATATGCGTTCTGTAAATATAGTT
GAAACAACTGCTTTCTTTGCTCACTTCAGTTAAGTCAATCCATTAAATATTTTTTTTCATAAGA
TTTAGTATAGCATCGTTACCCTGGATCAGTAGGGTAATGGTGTTAGTGTGACATGTGTATGTTC
AAATGTGCTCTCTCTCTAAAAAAAAGGGAATAGTAGTAGGGTAAACAAACTTGTCGTATTGATC
TTGAGGCAGATTCACACCAAAATCACTATAAATTGGTACTAATATCCTCATTTTGCAACATAAT
CTTGCAAGAAGCAATTTTCACAATTTGAGGACAATATGGTTTTCAGATGGTATATCACTTCAAA
ATGAAGCTTAGTTATAGATATTTCCTGATCAAAACTTGATGTTTGAGTTCATACTGCTAAAAAG
AGTCATATTTAAATTATTATATCTGGTAGATTCTACTATTTGGGACTGGAGTTCATTTCCCTGT
GCTGTTCCACAGGTTACATCTCTTACAACTTTGTCATTGGTGCCTATTCCTACTGGGGCCCTAA
GGCTGGTCAGGATATCTACAATATGGTAACTCCTATTCGCTTACTGATGCGCAGGGACATATGC
CTTTTACATATGGCTATTTAACCATTTTTTTTATGCGCTTACCTCTTTTTAGTGGATTTGGTTT
TGTAGCTTTGCACGGATTTTCTTGCATGAAAAATCATTCTGTTTGGTGTTTATATGAAGCTCTA
GTGTAGTGTAGCATACATCTACCTGCAGATATTTGGAATATCTTTAATACATTCTTGTTTCATT
GGTTAACCTTTCTTGTTGAACTTTGTCACACCAGGCGAGTGCAGATATAATGTTTGGTGGAATA
ACAATTGTCTGTGGAATATTTGGGACTCTTTCAGGGGGTTTCATTCTTGACAAGATAGACTCAA
CAATATCTAATGCTTTCAAGGTAAGAGGTGACTTTTCAAAGTAATTAATTATCTGCACTTAGTT
TTGGACATCTTATGTTGAAAAAGAACCAGATTTTGTTTGATTAAAAATATGTTTGCCAATTAAA
GATTTTGTAAGATAACATGTACTTCCTCCGTTTCATATTATAAGACTTTCTAGCATTGCCCATA
TTCATATATATGTTAATGAATCTAGACATATATGTATGCCTAGATTCATTAACATCTATATGAA
TGTGGGCAATGCTAGAAAGTCTTATAACCTGAAACGGAGGTAGTAGTTACCATTGCCTCCATAC
GATGCAAAAAATGTATTTTTCTTTAATTTTAGAGGCCATCTAGATTCTACTTTGAACACCAAAT
TTTGTTTCCATATATTTTAATGAAGTTGTAGAAATGCAATTTTCTGAAACCATTTTTAATAACT
ATTTTTTTGCATCCATATGTTCGTAGACCTTTTGACAAAGTTTATACATTTTGACTGCAAGCAT
TCTATGATGCAATATATGCAAAGTATATATATAAGTGCGGAGTAATGAAGTCAAAGGAAGTTGT
TTCCTGTGCAACTTATTTGCTTGCTTCAGTTCACAAAATTGTTTTCTTGCAGCTTCTTTCTGGT
GCAACTTTTCTTGGAGCAATATTTTGTTTTGGTGCCTTTTGTTTCAAGAGCCTTTATGGATTCA
TACCCTTCTTTTCAGTAGGAGAGCTTTTGGTCTTTGCAACTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021