Plant Circular RNA Database

Detail information of Os02g0192500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0192500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_013597
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 5153417-5156347  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0192500						
					
						Parent gene annotation
						
							Similar to Cellulose synthase-like protein (Fragment). (Os02t019
2500-01);Similar to cDNA clone:J033103E20, full insert sequence.
 (Os02t0192500-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0192500_circ_g.2 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0192500-02:3
Os02t0192500-01:3

General Information
CircRNA Name	Os02g0192500_circ_g.1
ID in PlantcircBase	osa_circ_013597
Alias	NA
Organism	Oryza sativa
Position	chr2: 5153417-5156347 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0192500
Parent gene annotation	Similar to Cellulose synthase-like protein (Fragment). (Os02t019 2500-01);Similar to cDNA clone:J033103E20, full insert sequence. (Os02t0192500-02)
Parent gene strand	-
Alternative splicing	Os02g0192500_circ_g.2
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0192500-02:3 Os02t0192500-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGAGTGCACCAGCCTTGTACCCCTTGCGGTTCTCCCGGATCTGGTACGTTATGTTCACCCCCTT
GTGGGCCCACCTCTCACACTCTATCCTCACCATCTCctgaacatctccaaggtagacaaacttc
catcccttaagactcgccctgattgccagatccatgtcctccactgtggtccggtccttccatc
ctcccgcc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGAACATCTCCAAGGTAGACAAACTTCCATCCCTTAAGACTCGCCCTGATTGCCAGATCCATG
TCCTCCACTGTGGTCCGGTCCTTCCATCCTCCCGCCTCGTTTACCGCGGAAACGCGCCACACAC
CAGCAGTTCCTGATTGAAAATTCACCGAATCAATCAGCCCTTATGTATAAAAATCATAACATAG
AATGCATATTCTATATCCTAGAATCTTCAGAGACAAAGTTCTTGGTGAAGAACAGATGAAATTA
CTGAAGGTTGAAGCTTACCATTGAAGCCGAAGAATGCGCAGACAGAGGAGCTCACTTCCTGCTC
CACTGTGAAGTGGTAATCCAAGGACATCTCCTGCATCCTTGTCATCAAGCACTCATCTGCATTC
ACTGGTAGAAACAAAAGACAGTATCAATATCATTGTAGTTCAAAGACAATGTCAACATCATATA
GTTCAAAGACAAGATCAACATCATAGCTCCATGAGAAATACTTGACAGGTAACAACTGTACTAT
ATACATCATTAAAACAAAGAGACCTGGAAACAGTTCTCAGCTAACCAGACTAGTAGCAAACATT
TTACTACTGCTACACTGTTGTGAAGAAATTGTGCAACTGTGGATGCCTGCACTGCACTGTCCTC
TGTAGTAATTATTTATTTGCTTGTTTCTTTATTTTTGGCAGGTTTTGTCCTGTTTCTTCTACTA
CTACTGTATTAAGACTAGTACTACTACCACTACTACTAAACAGTAACCTTGGGCAGTGGCCAAT
ACTAATAATCAATTGGACCCAAACTACTCCACACTAATCTCTGAATTTAGCTGCAGGATCCAAT
GCACATCGCAGCACAATTTCTGCTCGTGCCAAAACTCTGGAGATCTCACATGCCACTGTCACTG
TACTGCTATGCTTTGATAATAATTGCAACTTGATCACACCACTGTTGGAGAGAAGGACCAATTA
AGCTGGAGCTTCAGAGGGCACGGCCCCTAATTAATTACTACACTAATCGCTGCAGCATTTGACA
GCAGGACATGGCCGGACCTAGGGCTCAAGGATCACCGACGAGATGGGCCCACCCGTCACGTACA
CGCCACATGGTGGCGGCAGTGGCAGCACGGGTGGGCCCCACGTCACAGTGACTGCAGCGAGATG
GGTCAGCTCAGCTCAGCTCAGCTTCAGTGTCAGGACAAGCTGCTGCTGTGCTGACGTAGCCGCC
CTGGGACGCACAGCTCCTCTACTGCATGGAAGCCAAGGAAGGAATGGGGCTTGTACTTTACTTT
CCTTGTGTACTCGTGTTTGTGCTAGCGATTGGATCAATGCTAATGGAAATATAATTAGTTCTAA
TTAAGTGAAGAAGATCTTTGCCTTTACCTTGTTAACTATGCTTACTTTAGAGGATTTTATAGGA
ACCAAATAGAAGAAGGTGTTTATATGAACCAACTGATATCTTTTTTTTAAACGAATAGCACCAG
ACAATTTGATGAATCATATAGTGAGAAAACGTTTATAAGACCATAATCCTATAATATTTTATAT
TTTATAAACCAATTGTTAATTTAGGTCTGACCTTGTACAATCATGTTAGATATAGAGATCGGAT
TTTAATTTATTATAAATAAAAAATGATATTTTAGGTCATATGACCAAAGTTCAGCTCTTACTAA
CTGTCGGTCGGGCTATCGCGAGTCGTCATAGAAGTACGAGGCACGTGGATCTTCTCCATCATCT
TTACTTAATGAAGTCCACACTGCCACATACCCTACCAACAAGTACCAACTAAACCCTAAAAAAT
AATATGTGAACACAATTTGCATCCCGGAAGAAATGGGACGCATAATTGCCAGACGCAATCACCG
ACGACCCTCCATGCCGCCGTGATCACCGACGGCGATAGCAACACCCCTGGCCCAGCCGGTGGAG
CCAGCACCGCCGGCGATCGTCGGCGACACGCGCATATATTCCATCTTAAAATATAATTATTTAG
TATTGGATTTAACATCACCTAAATCTATCGGTCACATCATTTCGTTTATGCTTATGTTTATTAG
TTAATTTCAATTTTTAATCTTAAATTTGTAGTTGATTTCGGAGTTTTTTCGTCAAAGTTTATTT
TTCAGCATTTGCTTTTTTATCGCTAAAAATATGTATATAAAAAATTTATTTATAAATTATTTTT
CGTTTTCAAATATTTCGTTTGGCATGAATAAGCCAAACGATGAGATCCTAATAACCATATTTTT
GAACGAATGAGGTAGTTGATAATCATCATGATCGGATTGAGAGATCCGGCTCGATACGATTGAT
GAGAAGATCTAGCAAGATGCTGGTAGTTGCCAGTACAATGCTAGTATGAGACAAGGGCACGAGG
ATCTTAAGCTTATATACTCTAGTAGCTGTCAGAAATGTGCAACGTACCCTGCACATGCCCCGTC
AGTAAGTGACACTCACTCTCACTCGCCCAACCAACAACTCGATCGCACGGCCCAGCCATTAGAT
CACCCATAAATGGCCCAGATCAACTGGACAATATTCCGACTATATAAAATTCGCGGAATATGAG
ATCCCTTATTTACCCCCAATCACTCACCAACCGACACCACACGCAAATGTCTAGTCAACACGAG
ATATAGGGGGATGACATGTAGAGTCGGGATAGATATCGATTATACTATACTTACCGAAACGCCA
GCGGGCCTGGACGAGGGCGATGTCGGAGTTGTGGACGAGGAAGGGGATGGTGCGGCGGAGGAAA
TCAGGGTCCGGCTGGAAGTCGGCGTCGAAGATGGCCACGTACTCGCATTCGCGGACGTAGCCAT
GCTTCATCCCCTCCTTGAGTGCACCAGCCTTGTACCCCTTGCGGTTCTCCCGGATCTGGTACGT
TATGTTCACCCCCTTGTGGGCCCACCTCTCACACTCTATCCTCACCATCTC
						
					

			
		

Sequences
Splice junction sequence	TGAGTGCACCAGCCTTGTACCCCTTGCGGTTCTCCCGGATCTGGTACGTTATGTTCACCCCCTT GTGGGCCCACCTCTCACACTCTATCCTCACCATCTCctgaacatctccaaggtagacaaacttc catcccttaagactcgccctgattgccagatccatgtcctccactgtggtccggtccttccatc ctcccgcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGAACATCTCCAAGGTAGACAAACTTCCATCCCTTAAGACTCGCCCTGATTGCCAGATCCATG TCCTCCACTGTGGTCCGGTCCTTCCATCCTCCCGCCTCGTTTACCGCGGAAACGCGCCACACAC CAGCAGTTCCTGATTGAAAATTCACCGAATCAATCAGCCCTTATGTATAAAAATCATAACATAG AATGCATATTCTATATCCTAGAATCTTCAGAGACAAAGTTCTTGGTGAAGAACAGATGAAATTA CTGAAGGTTGAAGCTTACCATTGAAGCCGAAGAATGCGCAGACAGAGGAGCTCACTTCCTGCTC CACTGTGAAGTGGTAATCCAAGGACATCTCCTGCATCCTTGTCATCAAGCACTCATCTGCATTC ACTGGTAGAAACAAAAGACAGTATCAATATCATTGTAGTTCAAAGACAATGTCAACATCATATA GTTCAAAGACAAGATCAACATCATAGCTCCATGAGAAATACTTGACAGGTAACAACTGTACTAT ATACATCATTAAAACAAAGAGACCTGGAAACAGTTCTCAGCTAACCAGACTAGTAGCAAACATT TTACTACTGCTACACTGTTGTGAAGAAATTGTGCAACTGTGGATGCCTGCACTGCACTGTCCTC TGTAGTAATTATTTATTTGCTTGTTTCTTTATTTTTGGCAGGTTTTGTCCTGTTTCTTCTACTA CTACTGTATTAAGACTAGTACTACTACCACTACTACTAAACAGTAACCTTGGGCAGTGGCCAAT ACTAATAATCAATTGGACCCAAACTACTCCACACTAATCTCTGAATTTAGCTGCAGGATCCAAT GCACATCGCAGCACAATTTCTGCTCGTGCCAAAACTCTGGAGATCTCACATGCCACTGTCACTG TACTGCTATGCTTTGATAATAATTGCAACTTGATCACACCACTGTTGGAGAGAAGGACCAATTA AGCTGGAGCTTCAGAGGGCACGGCCCCTAATTAATTACTACACTAATCGCTGCAGCATTTGACA GCAGGACATGGCCGGACCTAGGGCTCAAGGATCACCGACGAGATGGGCCCACCCGTCACGTACA CGCCACATGGTGGCGGCAGTGGCAGCACGGGTGGGCCCCACGTCACAGTGACTGCAGCGAGATG GGTCAGCTCAGCTCAGCTCAGCTTCAGTGTCAGGACAAGCTGCTGCTGTGCTGACGTAGCCGCC CTGGGACGCACAGCTCCTCTACTGCATGGAAGCCAAGGAAGGAATGGGGCTTGTACTTTACTTT CCTTGTGTACTCGTGTTTGTGCTAGCGATTGGATCAATGCTAATGGAAATATAATTAGTTCTAA TTAAGTGAAGAAGATCTTTGCCTTTACCTTGTTAACTATGCTTACTTTAGAGGATTTTATAGGA ACCAAATAGAAGAAGGTGTTTATATGAACCAACTGATATCTTTTTTTTAAACGAATAGCACCAG ACAATTTGATGAATCATATAGTGAGAAAACGTTTATAAGACCATAATCCTATAATATTTTATAT TTTATAAACCAATTGTTAATTTAGGTCTGACCTTGTACAATCATGTTAGATATAGAGATCGGAT TTTAATTTATTATAAATAAAAAATGATATTTTAGGTCATATGACCAAAGTTCAGCTCTTACTAA CTGTCGGTCGGGCTATCGCGAGTCGTCATAGAAGTACGAGGCACGTGGATCTTCTCCATCATCT TTACTTAATGAAGTCCACACTGCCACATACCCTACCAACAAGTACCAACTAAACCCTAAAAAAT AATATGTGAACACAATTTGCATCCCGGAAGAAATGGGACGCATAATTGCCAGACGCAATCACCG ACGACCCTCCATGCCGCCGTGATCACCGACGGCGATAGCAACACCCCTGGCCCAGCCGGTGGAG CCAGCACCGCCGGCGATCGTCGGCGACACGCGCATATATTCCATCTTAAAATATAATTATTTAG TATTGGATTTAACATCACCTAAATCTATCGGTCACATCATTTCGTTTATGCTTATGTTTATTAG TTAATTTCAATTTTTAATCTTAAATTTGTAGTTGATTTCGGAGTTTTTTCGTCAAAGTTTATTT TTCAGCATTTGCTTTTTTATCGCTAAAAATATGTATATAAAAAATTTATTTATAAATTATTTTT CGTTTTCAAATATTTCGTTTGGCATGAATAAGCCAAACGATGAGATCCTAATAACCATATTTTT GAACGAATGAGGTAGTTGATAATCATCATGATCGGATTGAGAGATCCGGCTCGATACGATTGAT GAGAAGATCTAGCAAGATGCTGGTAGTTGCCAGTACAATGCTAGTATGAGACAAGGGCACGAGG ATCTTAAGCTTATATACTCTAGTAGCTGTCAGAAATGTGCAACGTACCCTGCACATGCCCCGTC AGTAAGTGACACTCACTCTCACTCGCCCAACCAACAACTCGATCGCACGGCCCAGCCATTAGAT CACCCATAAATGGCCCAGATCAACTGGACAATATTCCGACTATATAAAATTCGCGGAATATGAG ATCCCTTATTTACCCCCAATCACTCACCAACCGACACCACACGCAAATGTCTAGTCAACACGAG ATATAGGGGGATGACATGTAGAGTCGGGATAGATATCGATTATACTATACTTACCGAAACGCCA GCGGGCCTGGACGAGGGCGATGTCGGAGTTGTGGACGAGGAAGGGGATGGTGCGGCGGAGGAAA TCAGGGTCCGGCTGGAAGTCGGCGTCGAAGATGGCCACGTACTCGCATTCGCGGACGTAGCCAT GCTTCATCCCCTCCTTGAGTGCACCAGCCTTGTACCCCTTGCGGTTCTCCCGGATCTGGTACGT TATGTTCACCCCCTTGTGGGCCCACCTCTCACACTCTATCCTCACCATCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012625 						
					
						PMCS
						0.116752405

Conservation Information
Conserved circRNAs	osi_circ_012625
PMCS	0.116752405

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5156232-5156344(+)
5156346-5153419(-)
						
						Potential amino acid sequence
						
							MLHPLLECTSLVPLAVLPDLVRYVHPLVGPPLTLYPHHLLNISKVDKLPSLKTRPDCQIHVLHC
GPVLPSSRLVYRGNAPHTSSSIEAEECADRGAHFLLHCEVVIQGHLLHPCHQALICIHETPAGL
DEGDVGVVDEEGDGAAEEIRVRLEVGVEDGHVLAFADVAMLHPLLECTSLVPLAVLPDLVRYVH
PLVGPPLTLYPHHLLNISKVDKLPSLKTRPDCQIHVLHCGPVLPSSRLVYRGNAPHTSSSIEAE
ECADRGAHFLLHCEVVIQGHLLHPCHQALICIHETPAGLDEGDVGVVDEEGDGAAEEIRVRLEV
GVEDGHVLAFADVAMLHPLLECTSLVPLAVLPDLVRYVHPLVGPPLTLYPHHLLNISKVDKLPS
LKTRPDCQIHVLHCGPVLPSSRLVYRGNAPHTSSSIEAEECADRGAHFLLHCEVVIQGHLLHPC
HQALICIHETPAGLDEGDVGVVDEEGDGAAEEIRVRLEVGVEDGHVLAFADVAMLHPLLECTSL
VPLAVLPDLVRYVHPLVGPPLTLYPHHL(+)
MVRIECERWAHKGVNITYQIRENRKGYKAGALKEGMKHGYVRECEYVAIFDADFQPDPDFLRRT
IPFLVHNSDIALVQARWRFVNADECLMTRMQEMSLDYHFTVEQEVSSSVCAFFGFNGTAGVWRV
SAVNEAGGWKDRTTVEDMDLAIRASLKGWKFVYLGDVQEMVRIECERWAHKGVNITYQIRENRK
GYKAGALKEGMKHGYVRECEYVAIFDADFQPDPDFLRRTIPFLVHNSDIALVQARWRFVNADEC
LMTRMQEMSLDYHFTVEQEVSSSVCAFFGFNGTAGVWRVSAVNEAGGWKDRTTVEDMDLAIRAS
LKGWKFVYLGDVQEMVRIECERWAHKGVNITYQIRENRKGYKAGALKEGMKHGYVRECEYVAIF
DADFQPDPDFLRRTIPFLVHNSDIALVQARWRFVNADECLMTRMQEMSLDYHFTVEQEVSSSVC
AFFGFNGTAGVWRVSAVNEAGGWKDRTTVEDMDLAIRASLKGWKFVYLGDVQEMVRIECERWAH
KGVNITYQIRENRKGYKAGALKEGMKHGYVRECEYVAIFDADFQPDPDFLRRTIPFLVHNSDIA
LVQARWRFVNADECLMTRMQEMSLDYHFTVEQEVSSSVCAFFGFNGTAGVWRVSAVNEAGGWKD
RTTVEDMDLAIRASLKGWKFVYLGDVQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5156232-5156344(+) 5156346-5153419(-)
Potential amino acid sequence	MLHPLLECTSLVPLAVLPDLVRYVHPLVGPPLTLYPHHLLNISKVDKLPSLKTRPDCQIHVLHC GPVLPSSRLVYRGNAPHTSSSIEAEECADRGAHFLLHCEVVIQGHLLHPCHQALICIHETPAGL DEGDVGVVDEEGDGAAEEIRVRLEVGVEDGHVLAFADVAMLHPLLECTSLVPLAVLPDLVRYVH PLVGPPLTLYPHHLLNISKVDKLPSLKTRPDCQIHVLHCGPVLPSSRLVYRGNAPHTSSSIEAE ECADRGAHFLLHCEVVIQGHLLHPCHQALICIHETPAGLDEGDVGVVDEEGDGAAEEIRVRLEV GVEDGHVLAFADVAMLHPLLECTSLVPLAVLPDLVRYVHPLVGPPLTLYPHHLLNISKVDKLPS LKTRPDCQIHVLHCGPVLPSSRLVYRGNAPHTSSSIEAEECADRGAHFLLHCEVVIQGHLLHPC HQALICIHETPAGLDEGDVGVVDEEGDGAAEEIRVRLEVGVEDGHVLAFADVAMLHPLLECTSL VPLAVLPDLVRYVHPLVGPPLTLYPHHL(+) MVRIECERWAHKGVNITYQIRENRKGYKAGALKEGMKHGYVRECEYVAIFDADFQPDPDFLRRT IPFLVHNSDIALVQARWRFVNADECLMTRMQEMSLDYHFTVEQEVSSSVCAFFGFNGTAGVWRV SAVNEAGGWKDRTTVEDMDLAIRASLKGWKFVYLGDVQEMVRIECERWAHKGVNITYQIRENRK GYKAGALKEGMKHGYVRECEYVAIFDADFQPDPDFLRRTIPFLVHNSDIALVQARWRFVNADEC LMTRMQEMSLDYHFTVEQEVSSSVCAFFGFNGTAGVWRVSAVNEAGGWKDRTTVEDMDLAIRAS LKGWKFVYLGDVQEMVRIECERWAHKGVNITYQIRENRKGYKAGALKEGMKHGYVRECEYVAIF DADFQPDPDFLRRTIPFLVHNSDIALVQARWRFVNADECLMTRMQEMSLDYHFTVEQEVSSSVC AFFGFNGTAGVWRVSAVNEAGGWKDRTTVEDMDLAIRASLKGWKFVYLGDVQEMVRIECERWAH KGVNITYQIRENRKGYKAGALKEGMKHGYVRECEYVAIFDADFQPDPDFLRRTIPFLVHNSDIA LVQARWRFVNADECLMTRMQEMSLDYHFTVEQEVSSSVCAFFGFNGTAGVWRVSAVNEAGGWKD RTTVEDMDLAIRASLKGWKFVYLGDVQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0192500_circ_g.1

Address

Any questions?

Supported by