Detail information of Os10g0572900_circ_g.1


General Information
CircRNA Name Os10g0572900_circ_g.1
ID in PlantcircBase osa_circ_008117
Alias Os10circ10491
Organism Oryza sativa
Position chr10: 22742329-22745034  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method SMALT, Segemehl
Parent gene Os10g0572900
Parent gene annotation Similar to AT-hook protein 1. (Os10t0572900-01);Protein of unkno
wn function DUF296 domain containing protein. (Os10t0572900-02);
Similar to AT-hook protein 1. (Os10t0572900-03)
Parent gene strand -
Alternative splicing Os10g0572900_circ_igg.1
Support reads 2
Tissues panicle
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os10t0572900-03:3
Os10t0572900-01:2
Os10t0572900-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTGCCGCCCTGCGGCGGCGGCGCGGCGCCGCCCGCGGGCGCCGCCGCGTACAGCATGGGCCC
CGGGTGGTGGTGGTGCTGCTGCTCCCCCCCGGGCGCcttccgcgatgaagctagccacgacaac
ctggtagccatatgacatgatggcagaaatgcccggtaagcattaagaagttggaacagatgcg
ttagttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCGCGATGAAGCTAGCCACGACAACCTGGTAGCCATATGACATGATGGCAGAAATGCCCGG
TAAGCATTAAGAAGTTGGAACAGATGCGTTAGTTGTGACACTCGTTATACAGAACGAAATCGAA
CCTGGACAGGGGTTGCGGCCATCAGCATTCCAGCTACACATCCACCAAGAACTCGGCCATCAGA
TCCTGCAAGTGCGACACTCAGGCCACCAGTCCTGCTGCGAGTGTCGCCATCCTCTGCAAGCAGG
AAAGAACCTGATAGAGAGATGATCTCAAATCGGCCCTGCACAAAATAATACGCATTCATCAGAA
CATGATACAGTAGTTACTTTTGCTAATAGGAAATAACTAAAGCATGCACAATTCACAGAGCTAA
TTCCTCCAGGTACATGAATAATTGTGTACTGTCAAAGTAGTAGCATTATTGATTTTCTTTTTCA
CATTCATTGGTTTAATCACGACAAAAGAACTTGAAGTTAGATGAATCCATAGTGCTACACTAGT
GGCTATTATCAACAGATTTCCTGAAACTTCCAACAGAACAAGACTGGGTGTTCTAGTTAACAAA
AAGGCACAATTAGTTTCCTCCAGAACCTGGTCTTTCTCTACTATAGCCATACCACTGTTAGAAA
CAAAAAAAACAAAACAAAACAAAACTGATGTATTCTACAGTCTATACATCATTGAGAAGCCCCC
TTTTATTTCTAAGATACAGGTGCAACAATAACCCCCACAGAACCACACCCACTTGTGATCACAT
AAATGAGAAGTATTAAGCCCAATTCTTAAAGTGCACCAAAGATAAGTCACAAGACAAATACCTC
ATAAGTCACAAGTCCACCAGATGTAGCTGGCTGCCGAAGTGTTACATTGCTTATTGCACCATTC
GCTGAGAGAATGCAAACTGTGCGAGGGCCTTGCTGTGAGAAGGCCATAATTTTTGAAGCAACAT
CCTGTCAGCGAAGACAGTAGACAGTTAATGATGGAAATCAAGTTTTTACTATAACCAACATTGC
CAAGTGGGTTAATCACTAGATTAAACATGAAGAAAGAGTCTAGTTGCAACACAAAGGTACTATA
ATCACAACTCACATTGCATTCAAAAGAGACACCTAGTAAGCACTAAGGAAAGTATATAACTGCA
CCAAAACCCCCAAAAAAAAGAAGATGCAGAATTGAAGATATCAGAAGAAAAAAACCCAAGTTGT
GATATAATTGAAGTATCTGTATCTAAGAATCCTGAATAGCTTGAAATTGCAATTGAATTGTTAT
GCCTGACAGCTCATACAAATTCAGATACTTTCAGGAAAAGCAAATCCATTTAAATTTGTATGAA
CAATCAGCCCATTGCATCCACTTCTATCTAATTTAGGAGAGTTACACGGGGAAAAAAACAGGTC
TTTTCATACTTGGCTAAAGTAATTCCTTCAGCAAATTCATCTGGATACAAATATAAAAATTTTA
CTTTATGACAAGTTCAAAAAGGTTGCTAAACATATTAAGAAAATCGTATGATCAAGTGTGCTTT
AATTCAGTCAGTTGCAGGTATAACAGAAAATTCAGCAGTGCAAGATAACACAACTGAAGATGAC
ATTTTTTTCAGATGCGCAGTAAACATGGAACTCTAAGCACACCACAACAGGAGACTCCTGCAGG
CGAGTGCTCCTAGTTCCTATCAGTAGAGGCAATTGTATCCGACTATGAACAAGACAGTGCAGGT
GTGGAGTTGTGGACAGTCACAGTCCACAGGTGTGGCTACTACTACTACTTGCTGTTGGACAGCG
TACTACTACACAGCCAGCCAGAGAAGGCTTGTTGTACTTGATGATAGGAGTACTACTACACGTA
GTCCACGACAACGTAGGTGCATCGCCCACTATCTGTGCCGCTGACCGTGGGGCCGGGGCCGGTC
AACTGACAGCCATGCTGGGAATCTGACGGACACCGCAGCTCGTCCTCGTCTCGCAACCTTGGTT
GGTTCCTTTCCAACCTAACCAGTGATGGTCATGGTCATGGCTGGAGTGGAGTGGAGTGGAGTTA
GTACGTGCACCAAATCCACTCCGCAGGAAAAGCAGACATAGATCCATCACCACTTGCTGTACAG
CAGCAGCAGACTCTGCAATGGCTGGCTGCACGGATGGATCGAGGAGGAAGGAAGGAAGAAAAGA
TAATCGTTTTGTTTTGAGATCTGGGTTTACCTCGCCGGCCTTGACGGTGAGGATGTGAGGAGTG
AAGGCGATGCCCCATGAGCCTGCAAGATTTGAAGGCAAAAGCGTCAGTTTGGGATTAGATTCAG
CCGGAATCCACGGGGGAAGAAAAGGCGCTTTTGTTTTTCTCCGAGGAAAATGGTACTACCTAGG
GCTTCGAACTGCTTCTTCTTGCCGGAGCCGGGTGGCCGGCCGCGGCGCTTGGCGTTCGGATCCG
ACGCCGGGCTGCTGATGGAGAAGCCGTGCGGCTGGTGCCCTGGCGGCGGAGGCGGCGGCGCGGC
GCCGCCGGAGGCGGAGGAGATGGGGGCGAGCGCGAGCGCCATGCTCCCGTCGGGCGCGTACTTG
CGCGGGCGGCCGCGCTTCTTGCGCATCAGCTCGCCCATGCCCATCACATTGCCGCCCTGCGGCG
GCGGCGCGGCGCCGCCCGCGGGCGCCGCCGCGTACAGCATGGGCCCCGGGTGGTGGTGGTGCTG
CTGCTCCCCCCCGGGCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.123979043
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015