Plant Circular RNA Database

Detail information of GLYMA_17G039000_circ_ag.2

			
						 General Information
					
						CircRNA Name
						GLYMA_17G039000_circ_ag.2
					
						ID in PlantcircBase
						gma_circ_009451
					
						Alias
						novel_circ_000310
					
						Organism
						
							Glycine max						
					
						Position
						
							chr17: 2893012-2896609  JBrowse»						
					
						Reference genome
						
							v2.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							GLYMA_17G039000_circ_ag.1 GLYMA_17G039000_circ_ag.3 GLYMA_17G039000_circ_ag.4 GLYMA_17G039100_circ_g.1 						
					
						Support reads
						NA
					
						Tissues
						root
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	GLYMA_17G039000_circ_ag.2
ID in PlantcircBase	gma_circ_009451
Alias	novel_circ_000310
Organism	Glycine max
Position	chr17: 2893012-2896609 JBrowse»
Reference genome	v2.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	GLYMA_17G039000_circ_ag.1 GLYMA_17G039000_circ_ag.3 GLYMA_17G039000_circ_ag.4 GLYMA_17G039100_circ_g.1
Support reads	NA
Tissues	root
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGACCAGGGTCACATGTTTGGCTATGCCACTGATGAAACCCCTGAATTGATGCCATTGAGCCAT
GTTCTTGCAACAAAACTCGGTGCTCGTCTCACCGAGgttcgcaagaacggtacctgcccttggc
tgaggcctgatgggaagacccaagtgaccgttgagtattacaatgacaatggtgccagggttcc
ggttcgtg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTCGCAAGAACGGTACCTGCCCTTGGCTGAGGCCTGATGGGAAGACCCAAGTGACCGTTGAGT
ATTACAATGACAATGGTGCCAGGGTTCCGGTTCGTGTCCACACCGTGCTAATCTCCACCCAACA
CGACGAGACTGTCACCAATGACGAAATTGCTGCTGACCTCAAAGAGCATGTGATCAAGCCTGTG
ATCCCAGAGAAGTACCTTGATGAGAAGACCATTTTCCACTTGAACCCTTCAGGCCGTTTTGTCA
TTGGTGGCCCTCATGGCGATGCTGGTCTCACCGGCCGCAAGATCATTATCGATACTTATGGAGG
ATGGGGTGCTCATGGTGGTGGTGCTTTCTCCGGCAAGGACCCTACCAAGGTTGATAGGAGTGGT
GCTTACATTGTGAGACAGGCTGCTAAGAGCATTGTGGCAAGTGGACTTGCCAGAAGGTGCATTG
TGCAAGTGTCTTATGCCATTGGTGTGCCTGAGCCTTTGTCTGTGTTTGTTGACACCTATGGCAC
TGGAAAGATCCCTGACAAGGAGATCCTTAACATTGTGAAGGAGAACTTTGATTTCAGGCCTGGT
ATGATCTCCATCAACCTTGATCTCAAGAGGGGTGGAAATAACAGGTTTTTGAAGACTGCTGCAT
ATGGACACTTTGGAAGAGAGGACCCTGACTTCACATGGGAAGTGATCAAGCCACTCAAGTGGGA
GGAGGCCTAAGGCCATTCATTCCTCACCGCTGTGTGCTGGGAGTTTTTTGAGCTTTGCCCTTAT
CATATCTATAATTTGTTTCATTTATTTTACTTAATTCGTGTGTGCTTCTCACTTTCTCTTCCTC
CTCTCCATTCTATTTTGTTTCTTCTATCCTCATATGTAATTTTTTTACATGATCAATTAAACGT
GATACAAAATTATTCTTAATTAGCACGTGTCCTTGTTTCTAGTCCCTTTACTTTTGAATGTCTA
TGTCTACACATACATATAGGACGTTTTACTTTTATATGTGTGTCAGCTTGGTTGGAATTCTGTG
GTATCCGTTTATCAGTTAGTTCAGGTGCACACAAATGCGACAATTAGTTGGTAAAACTGCAAGA
GATTTTGCAAATATCATACAAATAATAACAATAAATAGTTTGTCGTTTTCATGCTGCTGGTTTG
ATCTTCGCAGTTCACACTGATCAAACTAAACAACGGTGTTTGGTAATATTCAACCTTCTCTCTT
TCAAACCTTACTACTAACCTCGTGCGTTGGGTAACATTAGGCTTCCAACTTATCTGTTTTCTTT
GCCATAACTTGTTGCCAAAGAGTGTTTGTTCATAATAAGTGTTGGAGATATAAGAGTGTTGGAA
AAGTTTATTTGCCATAACTTGTTGCCATAAAGAGTTGAAGTAACCTCTTGATAGGAAAATGGCT
CAAGACAAGCTGTGAATAGAAGTCAGAAAACAAGCAAATGAAGTAGAGTAAGTGGAATAAACAA
AGTCCAATAGTTTAGTGAACTTATAATCATGTTGAGAATGAGAAGGATCCACCCTCACAAAAAA
GGTTATTGCCTAATTAATAGTAGGGATTGAAGAAGTATCAATAATCAATAAGAGGGACATTTGG
ATTGACACAAACTATTAGTATAAAAAAAAAATGTAAAACTAAATGGACAACAATCTAAGAAAGC
GAGTATGTGTTGTACTCGGAAAACATAACATAATGTGATTTTGATTGTGGAAACTGAAAACAAT
AACATTTAAGTTTTATTTATCTCTTTGCCTAACAATTTTTTTAATTACTTTTTTTATAGTTTTT
ATGATGAAGATAATTAATATTTTTTACAAATATTATATTTTCCTTTTTACCATCTTTGAAGATA
ATTGCTTTTTTTTCCAATTTAGACAAATATTTGAGTATCAATGATATTCCTTTTTAATCCATTA
TTGCAATTTAAAAGACCATCAATGATTACATTTTCAATCAAATGACTTTATTAGTCTTCACTTT
ACATCGATTTAAATCAAACTAATAATTTTGTATGGACTAAATCTCTGAACATTTTTATATTTAC
AACATATTTTAACATTTATTAAATAATTAGTATTTAATACTATTAGTAGAATAATGGGAGTAGC
AGGAGGGAGGCACTGAGAGAATAGAGATGGCATGGAAGTAAGCAATCAAGTCAAAATCAGAGTT
GGCCAACCCCAAAGGCTGTAGTAGGTAAGCATGGCCCATTTTAGTTTTTACATTCATCTCTCAT
TTTCACCTCAACGGTTCAGATTCAATCTGACTCCCCGATCTCAGCCGTGGATTCAAATGCCACC
TCAGGCACATGCAATTCCAAATGGATGAACCTAACCCACAATCTAATCTTGTTACTTAGGGGCT
TTTCCGTCATTAAATGACACCACCTACCCCCTTCTCCCTATAAATGGCAACTCAATGCCCCCCT
TAGAACTCGCAGCGCTTGATTTGAGGCCAGGCAAGCCCCACTCAACCACCACACCTCTCCTCGT
TCACGCTACCCCTTTCTGCTCTTCTTCTACCTTTCAAGGTACTCTTCTTTCCCTCTGTTGCTGC
AACCTTCTCTTTCTTTAAGATTGCCTCAATTTCGGATCTTGCACCTCTGGGTTGCTTTGCTTTG
CTTTTTCCTCTACTGGGTTGATTTCTGTTTCCCTAAACCGGTTTAGACGAATGTGAACACTACT
TCTTTTGTTTAATTACTCTGGAATACGTGTTAGGCTTTCAGATCTAGTTGAAATCGTATTGCAC
TTTTAGGGGGAGTTTGGATTTCTAATAAGAAATTGACCTTTTGCTGAGAATTGGTTCGGTGATT
AGAGGGTTTCCGTAAATTTTTGAAGTTTTACATGCTTGTATCTGTTTATTTTTGTTTCTCACAT
CTATTATTGTTAGGTGAAGGAAATTATGTATTGAGAGTCTGTCTGATACTAAATATAAACACCT
CAATAGGGGCTCTAACACTGATTTTATCATTTGCTGCTTGTGTGTATGGTTAAAGAAAGGCAAT
TGTGTTTTAATTTTCTGCAAGCTTTCGTTTGCTGAATTTTATGCATATATTTTCCTCCCTTTTG
TGAACTTCCTTTTTGTAGTTCTAATTCCATTTTTGGTGTCTGCAGTTTTAAAAGTATAAAGATG
GCAGAGACATTCCTATTTACCTCAGAGTCGGTGAACGAGGGACACCCTGACAAGCTCTGCGACC
AAATCTCCGATGCTGTCCTCGACGCTTGCCTCGAGCAGGACCCAGACAGCAAAGTTGCCTGCGA
AACATGCACCAAAACCAACTTGGTCATGGTCTTCGGAGAAATCACGACCAAGGCCAACGTTGAC
TACGAGAAGATAGTGCGTGACACCTGCAGGAACATCGGCTTCGTCTCAAATGATGTGGGACTGG
ATGCCGACAACTGCAAGGTCCTCGTCAACATTGAGCAGCAGAGCCCTGATATTGCTCAGGGTGT
ACACGGCCACCTTACCAAAAAACCTGAAGAAATTGGTGCTGGTGACCAGGGTCACATGTTTGGC
TATGCCACTGATGAAACCCCTGAATTGATGCCATTGAGCCATGTTCTTGCAACAAAACTCGGTG
CTCGTCTCACCGAG
						
					

			
		

Sequences
Splice junction sequence	TGACCAGGGTCACATGTTTGGCTATGCCACTGATGAAACCCCTGAATTGATGCCATTGAGCCAT GTTCTTGCAACAAAACTCGGTGCTCGTCTCACCGAGgttcgcaagaacggtacctgcccttggc tgaggcctgatgggaagacccaagtgaccgttgagtattacaatgacaatggtgccagggttcc ggttcgtg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTCGCAAGAACGGTACCTGCCCTTGGCTGAGGCCTGATGGGAAGACCCAAGTGACCGTTGAGT ATTACAATGACAATGGTGCCAGGGTTCCGGTTCGTGTCCACACCGTGCTAATCTCCACCCAACA CGACGAGACTGTCACCAATGACGAAATTGCTGCTGACCTCAAAGAGCATGTGATCAAGCCTGTG ATCCCAGAGAAGTACCTTGATGAGAAGACCATTTTCCACTTGAACCCTTCAGGCCGTTTTGTCA TTGGTGGCCCTCATGGCGATGCTGGTCTCACCGGCCGCAAGATCATTATCGATACTTATGGAGG ATGGGGTGCTCATGGTGGTGGTGCTTTCTCCGGCAAGGACCCTACCAAGGTTGATAGGAGTGGT GCTTACATTGTGAGACAGGCTGCTAAGAGCATTGTGGCAAGTGGACTTGCCAGAAGGTGCATTG TGCAAGTGTCTTATGCCATTGGTGTGCCTGAGCCTTTGTCTGTGTTTGTTGACACCTATGGCAC TGGAAAGATCCCTGACAAGGAGATCCTTAACATTGTGAAGGAGAACTTTGATTTCAGGCCTGGT ATGATCTCCATCAACCTTGATCTCAAGAGGGGTGGAAATAACAGGTTTTTGAAGACTGCTGCAT ATGGACACTTTGGAAGAGAGGACCCTGACTTCACATGGGAAGTGATCAAGCCACTCAAGTGGGA GGAGGCCTAAGGCCATTCATTCCTCACCGCTGTGTGCTGGGAGTTTTTTGAGCTTTGCCCTTAT CATATCTATAATTTGTTTCATTTATTTTACTTAATTCGTGTGTGCTTCTCACTTTCTCTTCCTC CTCTCCATTCTATTTTGTTTCTTCTATCCTCATATGTAATTTTTTTACATGATCAATTAAACGT GATACAAAATTATTCTTAATTAGCACGTGTCCTTGTTTCTAGTCCCTTTACTTTTGAATGTCTA TGTCTACACATACATATAGGACGTTTTACTTTTATATGTGTGTCAGCTTGGTTGGAATTCTGTG GTATCCGTTTATCAGTTAGTTCAGGTGCACACAAATGCGACAATTAGTTGGTAAAACTGCAAGA GATTTTGCAAATATCATACAAATAATAACAATAAATAGTTTGTCGTTTTCATGCTGCTGGTTTG ATCTTCGCAGTTCACACTGATCAAACTAAACAACGGTGTTTGGTAATATTCAACCTTCTCTCTT TCAAACCTTACTACTAACCTCGTGCGTTGGGTAACATTAGGCTTCCAACTTATCTGTTTTCTTT GCCATAACTTGTTGCCAAAGAGTGTTTGTTCATAATAAGTGTTGGAGATATAAGAGTGTTGGAA AAGTTTATTTGCCATAACTTGTTGCCATAAAGAGTTGAAGTAACCTCTTGATAGGAAAATGGCT CAAGACAAGCTGTGAATAGAAGTCAGAAAACAAGCAAATGAAGTAGAGTAAGTGGAATAAACAA AGTCCAATAGTTTAGTGAACTTATAATCATGTTGAGAATGAGAAGGATCCACCCTCACAAAAAA GGTTATTGCCTAATTAATAGTAGGGATTGAAGAAGTATCAATAATCAATAAGAGGGACATTTGG ATTGACACAAACTATTAGTATAAAAAAAAAATGTAAAACTAAATGGACAACAATCTAAGAAAGC GAGTATGTGTTGTACTCGGAAAACATAACATAATGTGATTTTGATTGTGGAAACTGAAAACAAT AACATTTAAGTTTTATTTATCTCTTTGCCTAACAATTTTTTTAATTACTTTTTTTATAGTTTTT ATGATGAAGATAATTAATATTTTTTACAAATATTATATTTTCCTTTTTACCATCTTTGAAGATA ATTGCTTTTTTTTCCAATTTAGACAAATATTTGAGTATCAATGATATTCCTTTTTAATCCATTA TTGCAATTTAAAAGACCATCAATGATTACATTTTCAATCAAATGACTTTATTAGTCTTCACTTT ACATCGATTTAAATCAAACTAATAATTTTGTATGGACTAAATCTCTGAACATTTTTATATTTAC AACATATTTTAACATTTATTAAATAATTAGTATTTAATACTATTAGTAGAATAATGGGAGTAGC AGGAGGGAGGCACTGAGAGAATAGAGATGGCATGGAAGTAAGCAATCAAGTCAAAATCAGAGTT GGCCAACCCCAAAGGCTGTAGTAGGTAAGCATGGCCCATTTTAGTTTTTACATTCATCTCTCAT TTTCACCTCAACGGTTCAGATTCAATCTGACTCCCCGATCTCAGCCGTGGATTCAAATGCCACC TCAGGCACATGCAATTCCAAATGGATGAACCTAACCCACAATCTAATCTTGTTACTTAGGGGCT TTTCCGTCATTAAATGACACCACCTACCCCCTTCTCCCTATAAATGGCAACTCAATGCCCCCCT TAGAACTCGCAGCGCTTGATTTGAGGCCAGGCAAGCCCCACTCAACCACCACACCTCTCCTCGT TCACGCTACCCCTTTCTGCTCTTCTTCTACCTTTCAAGGTACTCTTCTTTCCCTCTGTTGCTGC AACCTTCTCTTTCTTTAAGATTGCCTCAATTTCGGATCTTGCACCTCTGGGTTGCTTTGCTTTG CTTTTTCCTCTACTGGGTTGATTTCTGTTTCCCTAAACCGGTTTAGACGAATGTGAACACTACT TCTTTTGTTTAATTACTCTGGAATACGTGTTAGGCTTTCAGATCTAGTTGAAATCGTATTGCAC TTTTAGGGGGAGTTTGGATTTCTAATAAGAAATTGACCTTTTGCTGAGAATTGGTTCGGTGATT AGAGGGTTTCCGTAAATTTTTGAAGTTTTACATGCTTGTATCTGTTTATTTTTGTTTCTCACAT CTATTATTGTTAGGTGAAGGAAATTATGTATTGAGAGTCTGTCTGATACTAAATATAAACACCT CAATAGGGGCTCTAACACTGATTTTATCATTTGCTGCTTGTGTGTATGGTTAAAGAAAGGCAAT TGTGTTTTAATTTTCTGCAAGCTTTCGTTTGCTGAATTTTATGCATATATTTTCCTCCCTTTTG TGAACTTCCTTTTTGTAGTTCTAATTCCATTTTTGGTGTCTGCAGTTTTAAAAGTATAAAGATG GCAGAGACATTCCTATTTACCTCAGAGTCGGTGAACGAGGGACACCCTGACAAGCTCTGCGACC AAATCTCCGATGCTGTCCTCGACGCTTGCCTCGAGCAGGACCCAGACAGCAAAGTTGCCTGCGA AACATGCACCAAAACCAACTTGGTCATGGTCTTCGGAGAAATCACGACCAAGGCCAACGTTGAC TACGAGAAGATAGTGCGTGACACCTGCAGGAACATCGGCTTCGTCTCAAATGATGTGGGACTGG ATGCCGACAACTGCAAGGTCCTCGTCAACATTGAGCAGCAGAGCCCTGATATTGCTCAGGGTGT ACACGGCCACCTTACCAAAAAACCTGAAGAAATTGGTGCTGGTGACCAGGGTCACATGTTTGGC TATGCCACTGATGAAACCCCTGAATTGATGCCATTGAGCCATGTTCTTGCAACAAAACTCGGTG CTCGTCTCACCGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						1.183945099

Conservation Information
Conserved circRNAs	NA
PMCS	1.183945099

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						lv et al., 2020

circRNA

Detail information of GLYMA_17G039000_circ_ag.2

Address

Any questions?

Supported by