Detail information of POPTR_0003s12670_circ_g.2


General Information
CircRNA Name POPTR_0003s12670_circ_g.2
ID in PlantcircBase pop_circ_001051
Alias Chr03:14737990-14740773
Organism Populus trichocarpa
Position chr3: 13179395-13182178  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method CIRCexplorer
Parent gene POPTR_0003s12670
Parent gene annotation NA
Parent gene strand +
Alternative splicing POPTR_0003s12670_circ_g.1
Support reads NA
Tissues stem xylem
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered POPTR_0003s12670.1:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGACTTTGCTGAGATTCCAAAACTCCAGAATGCATGTTCAATGCTGCGATGGTGCTCTAGA
GCTCTTTCTTTCTGCACCTGTGCTCCTTCTTTGGAGatatctgtgctggaatcactgtactcga
gatttagtgacttgccaatatatattaaagaaagcaagaagctgtcgaaaaaactttcatcagc
aaaggtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATCTGTGCTGGAATCACTGTACTCGAGATTTAGTGACTTGCCAATATATATTAAAGAAAGCA
AGAAGCTGTCGAAAAAACTTTCATCAGCAAAGGTAAATTTTTTGTTGACACATTCAGATTTTAG
TTTTCCTCTGTAATTTTCTTGATTTGTCATATAGATACCTAGGTATGCAACCTGGGTTCCTGTG
ACCTAAGAAGTGAAGGAACCTTATTAATTCAGGTTTATTCAATTTGATTTGCTTGACCATTTAT
ATAAGCATTTGTGAATGGTCACTCACTTGTATATGTATCTTTTTAAATGGTAGATTTGTGTTCT
AAAACATTTAGGTTTGGGTGGTAAAGAGGGATTTTGTTATTGTAGTCCTGACAGATTGTTGTTT
CCTCTGACTCTTTGCACATCATGAATGTGATTTTCTTCCTGGATGGTGGTTAATTTTTTACACG
ATTCTTTGTGAATTTGTTTACATTACATGTTATTTTCTCTTCCATTTCATGCCAGCTTAGACGA
TGTTTTCATTTACTTCAAAAATGCTTGCTTTTCAGGGATTGGTGTTTGGTTTAAATTAATATCT
ATAAGTGTGTTTTTAATCATGATAAAAAGGATAATTTCTTTCAATCCTCTTTAAACTGTACTTT
TTCATGAGAATGCTGTCCAAGCAAAGGTCATAACTCTATATAATTTTATGTTATTGAACATACC
CACATCCCTTATGTCCAATGCTCTCAACAGATCTACTTTCTTTCATAGTGCATTTTTTGTTGGC
CAAAGGTCATTGTACCAGCATAAGCAATTTCCTTAGTATTGTATCTTTTTAGCAGGTACCTTTC
TGTATTCTGTTGCTCATGTAGTTTATTGCCCTGTAGATCTGGATAGACAGTGCAAAGAAATGCA
TATCAGAGACACAAAGCGCTGCAGTTGACATTGATATTCTCTACAAGCTGAAGTCAGAGGTGAT
TTGAATTTCTTTTTCCTGTAAAACTTATACAACATCTTGTCAATTTCCAAATTTATTCTAATTG
TTATAATGTTTGTTGAATAGATGTCGGAGCTTCAAATTCAACTTCCAGAAACAGAATTGCTTTT
GGATCTAGTAAGGAAAGCTGAATCATGTCAGTCTCAGTGCAAGGAAATCTTGAAAGCTCCATTT
AGTTTAAAGGTTAACATCATCATCATTTTATTTTTCTCCCTTGAGTGTTCTGTGAAGCTTGGGA
GCTTAAATTTTAGAAGTGTTTACTGATGCAGAATGTTGAAGTGTTGCTTCAAGAATTCAAGAAT
TTTACTGTTAACATACCGGAGTTGATGCTTCTGAAGCAATGCCACATCAATGCTGTTTCATGGA
TTTCTCGCTGTAATGATGTTTTGGTGAATCTTCATGAACGGGAAGATCAAGATAAAGTAGTTAA
TGAATTAAATTGCCTATTAAAAGATGCAGCATCTTTGAGAATTCAAGGTTTCTTTCTTGGAATG
TTCAGATTCGTTAAATAGTAAATGTTCATCTCTGTTGGCATTATCTTTGCTGGTGTAAATTTTT
CTTAATGCCCAGTCATTTCCTTGAACAGTTGATGAGTTGCCTCTAGTTGAGTTAGAGTTGAAGA
AGGCTTGTTGCAGAGTAAAAGTTCTGAAAGTAATCTATCCCTATCCTCTTATTTCTATATTCTT
CCAGTGGCTGTTTTGTCACAGTATATGTTTTGATTTAATGTCACAATCTTCCTTGTCCCATTCC
CCAAAACATGATGGTTTAAATTTTGTAGATAACAAGGGCTATGTCCACTTGATGATTGATGCAT
TCAATTAAAAAAAACTTGTATTGGTTATGCATCTCTTACAAATTTATTTTGCTCATTACAGGCT
CGTGATATGAAAATGCCTTTGGACTTCATTCAGGAACTGATGATGGAGGCTTTTGTGTATGTTT
TTCATGCACTGCTACAGTAACCTAGATATTTGTGTTAGATTTTGAGTGCTCATTCTGTTGGTTT
TTCCTCTCAGGCTACAGATTGAAAAAGAGAAACTGTTTGTTGATTTGTCTGGAGTAATTGCAGC
TGTGAGGTGTTGGGAGGAAAGAGCCACAAAACTTCTTGCACAGGAAGCTCAAATGTTGGATTTT
GAGGATATTATAAGGTTTTAAGTGTGCTTAGCTTGTTTGTTTTGACTTGATGTGTTATATTTTG
TGTTCATAACAGTTGAGTTGTAATCTCTTAGGACTTCAGCAGATATACCTGTGCTTCTACCCTT
GCTAGATGATATTAAAGATGCTGTAGCAATGGCTAAGTCCTGGTTAGAGAATTCTGCGCCATTT
TTGGTTTCTTCTAGTTCCATGGTATCTGGCTCTGTTTCTTCACTCAAACTCGAGGTCCTAAAGG
TTTGTCTTGTCTGCAGAATATATTATATCCAGAAAATATTGATCAACCATGATTTTGCAAATGT
AATTTTTGTCATGCAGGAGTTGGTTTCACACTCGAAGTTACTAAAAATATCTTTGGATGAACGA
AGAATGCTTGAAATGGTTCTGAAGAACTGTGATGAATGGCAGCAGGATGCCAACTCTGCATTGC
AGGATGCTAGGTGCATTCTGAGTACAGATGATATTGATGATGGAAAGAACGGTTGTCTTTTTGG
AAAAGTTGAACATTTAGCTACTAAAATGGAATCCATCACTAAAGCTGGTTTATCTCTGAATTTT
GACTTTGCTGAGATTCCAAAACTCCAGAATGCATGTTCAATGCTGCGATGGTGCTCTAGAGCTC
TTTCTTTCTGCACCTGTGCTCCTTCTTTGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.093336788
Functional Information
Coding potential Y
Potential coding position 13180440-13182175(+)
13182112-13180269(+)
13180323-13181493(-)
Potential amino acid sequence MSELQIQLPETELLLDLVRKAESCQSQCKEILKAPFSLKNVEVLLQEFKNFTVNIPELMLLKQC
HINAVSWISRCNDVLVNLHEREDQDKVVNELNCLLKDAASLRIQVDELPLVELELKKACCRVKV
LKARDMKMPLDFIQELMMEAFVLQIEKEKLFVDLSGVIAAVRCWEERATKLLAQEAQMLDFEDI
IRTSADIPVLLPLLDDIKDAVAMAKSWLENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLL
KISLDERRMLEMVLKNCDEWQQDANSALQDARCILSTDDIDDGKNGCLFGKVEHLATKMESITK
AGLSLNFDFAEIPKLQNACSMLRWCSRALSFCTCAPSLEISVLESLYSRFSDLPIYIKESKKLS
KKLSSAKIWIDSAKKCISETQSAAVDIDILYKLKSEMSELQIQLPETELLLDLVRKAESCQSQC
KEILKAPFSLKNVEVLLQEFKNFTVNIPELMLLKQCHINAVSWISRCNDVLVNLHEREDQDKVV
NELNCLLKDAASLRIQVDELPLVELELKKACCRVKVLKARDMKMPLDFIQELMMEAFVLQIEKE
KLFVDLSGVIAAVRCWEERATKLLAQEAQMLDFEDIIRTSADIPVLLPLLDDIKDAVAMAKSWL
ENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLLKISLDERRMLEMVLKNCDEWQQDANSAL
QDARCILSTDDIDDGKNGCLFGKVEHLATKMESITKAGLSLNFDFAEIPKLQNACSMLRWCSRA
LSFCTCAPSLEISVLESLYSRFSDLPIYIKESKKLSKKLSSAKIWIDSAKKCISETQSAAVDID
ILYKLKSEMSELQIQLPETELLLDLVRKAESCQSQCKEILKAPFSLKNVEVLLQEFKNFTVNIP
ELMLLKQCHINAVSWISRCNDVLVNLHEREDQDKVVNELNCLLKDAASLRIQVDELPLVELELK
KACCRVKVLKARDMKMPLDFIQELMMEAFVLQIEKEKLFVDLSGVIAAVRCWEERATKLLAQEA
QMLDFEDIIRTSADIPVLLPLLDDIKDAVAMAKSWLENSAPFLVSSSSMVSGSVSSLKLEVLKE
LVSHSKLLKISLDERRMLEMVLKNCDEWQQDANSALQDARCILSTDDIDDGKNGCLFGKVEHLA
TKMESITKAGLSLNFDFAEIPKLQNACSMLRWCSRALSFCTCAPSLEISVLESLYSRFSDLPIY
IKESKKLSKKLSSAKIWIDSAKKCISETQSAAVDIDILYKLKSEMSELQIQLPETELLLDLVRK
AESCQSQCKEILKAPFSLKNVEVLLQEFKNFTVNIPELMLLKQCHINAVSWISRCNDVLVNLHE
REDQDKVVNELNCLLKDAASLRIQVDELPLVELELKKACCRVKVLKARDMKMPLDFIQELMMEA
FVLQIEKEKLFVDLSGVIAAVRCWEERATKLLAQEAQMLDFEDIIRTSADIPVLLPLLDDIKDA
VAMAKSWLENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLLKISLDERRMLEMVLKNCDEW
QQDANSALQDARCILSTDDIDDGKNGCLFGKVEHLATKMESITKAGLSLNFDFAEIPKLQNACS
MLRWCSRALSFCTCAPSLE(+)
MHVQCCDGALELFLSAPVLLLWRYLCWNHCTRDLVTCQYILKKARSCRKNFHQQRSG*(+)
MSTAALCVSDMHFFALSIQIFADESFFDSFLLSLIYIGKSLNLEYSDSSTDISKEGAQVQKERA
LEHHRSIEHAFWSFGISAKSKFRDKPALVMDSILVAKCSTFPKRQPFFPSSISSVLRMHLASCN
AELASCCHSSQFFRTISSILRSSKDIFSNFECETNSFRTSSLSEETEPDTMELEETKNGAEFSN
QDLAIATASLISSSKGRSTGISAEVLIISSKSNI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021