Detailed infomation of each circRNA
General Information | |
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CircRNA Name | POPTR_0003s12670_circ_g.2 |
ID in PlantcircBase | pop_circ_001051 |
Alias | Chr03:14737990-14740773 |
Organism | Populus trichocarpa |
Position | chr3: 13179395-13182178 JBrowse» |
Reference genome | Populus trichocarpa genome v3.0 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | POPTR_0003s12670 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | POPTR_0003s12670_circ_g.1 |
Support reads | NA |
Tissues | stem xylem |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | POPTR_0003s12670.1:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.093336788 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13180440-13182175(+) 13182112-13180269(+) 13180323-13181493(-) |
Potential amino acid sequence |
MSELQIQLPETELLLDLVRKAESCQSQCKEILKAPFSLKNVEVLLQEFKNFTVNIPELMLLKQC HINAVSWISRCNDVLVNLHEREDQDKVVNELNCLLKDAASLRIQVDELPLVELELKKACCRVKV LKARDMKMPLDFIQELMMEAFVLQIEKEKLFVDLSGVIAAVRCWEERATKLLAQEAQMLDFEDI IRTSADIPVLLPLLDDIKDAVAMAKSWLENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLL KISLDERRMLEMVLKNCDEWQQDANSALQDARCILSTDDIDDGKNGCLFGKVEHLATKMESITK AGLSLNFDFAEIPKLQNACSMLRWCSRALSFCTCAPSLEISVLESLYSRFSDLPIYIKESKKLS KKLSSAKIWIDSAKKCISETQSAAVDIDILYKLKSEMSELQIQLPETELLLDLVRKAESCQSQC KEILKAPFSLKNVEVLLQEFKNFTVNIPELMLLKQCHINAVSWISRCNDVLVNLHEREDQDKVV NELNCLLKDAASLRIQVDELPLVELELKKACCRVKVLKARDMKMPLDFIQELMMEAFVLQIEKE KLFVDLSGVIAAVRCWEERATKLLAQEAQMLDFEDIIRTSADIPVLLPLLDDIKDAVAMAKSWL ENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLLKISLDERRMLEMVLKNCDEWQQDANSAL QDARCILSTDDIDDGKNGCLFGKVEHLATKMESITKAGLSLNFDFAEIPKLQNACSMLRWCSRA LSFCTCAPSLEISVLESLYSRFSDLPIYIKESKKLSKKLSSAKIWIDSAKKCISETQSAAVDID ILYKLKSEMSELQIQLPETELLLDLVRKAESCQSQCKEILKAPFSLKNVEVLLQEFKNFTVNIP ELMLLKQCHINAVSWISRCNDVLVNLHEREDQDKVVNELNCLLKDAASLRIQVDELPLVELELK KACCRVKVLKARDMKMPLDFIQELMMEAFVLQIEKEKLFVDLSGVIAAVRCWEERATKLLAQEA QMLDFEDIIRTSADIPVLLPLLDDIKDAVAMAKSWLENSAPFLVSSSSMVSGSVSSLKLEVLKE LVSHSKLLKISLDERRMLEMVLKNCDEWQQDANSALQDARCILSTDDIDDGKNGCLFGKVEHLA TKMESITKAGLSLNFDFAEIPKLQNACSMLRWCSRALSFCTCAPSLEISVLESLYSRFSDLPIY IKESKKLSKKLSSAKIWIDSAKKCISETQSAAVDIDILYKLKSEMSELQIQLPETELLLDLVRK AESCQSQCKEILKAPFSLKNVEVLLQEFKNFTVNIPELMLLKQCHINAVSWISRCNDVLVNLHE REDQDKVVNELNCLLKDAASLRIQVDELPLVELELKKACCRVKVLKARDMKMPLDFIQELMMEA FVLQIEKEKLFVDLSGVIAAVRCWEERATKLLAQEAQMLDFEDIIRTSADIPVLLPLLDDIKDA VAMAKSWLENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLLKISLDERRMLEMVLKNCDEW QQDANSALQDARCILSTDDIDDGKNGCLFGKVEHLATKMESITKAGLSLNFDFAEIPKLQNACS MLRWCSRALSFCTCAPSLE(+) MHVQCCDGALELFLSAPVLLLWRYLCWNHCTRDLVTCQYILKKARSCRKNFHQQRSG*(+) MSTAALCVSDMHFFALSIQIFADESFFDSFLLSLIYIGKSLNLEYSDSSTDISKEGAQVQKERA LEHHRSIEHAFWSFGISAKSKFRDKPALVMDSILVAKCSTFPKRQPFFPSSISSVLRMHLASCN AELASCCHSSQFFRTISSILRSSKDIFSNFECETNSFRTSSLSEETEPDTMELEETKNGAEFSN QDLAIATASLISSSKGRSTGISAEVLIISSKSNI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Liu et al., 2021 |