Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | POPTR_0003s12670_circ_g.2 |
| ID in PlantcircBase | pop_circ_001051 |
| Alias | Chr03:14737990-14740773 |
| Organism | Populus trichocarpa |
| Position | chr3: 13179395-13182178 JBrowse» |
| Reference genome | Populus trichocarpa genome v3.0 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | POPTR_0003s12670 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | POPTR_0003s12670_circ_g.1 |
| Support reads | NA |
| Tissues | stem xylem |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | POPTR_0003s12670.1:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.093336788 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
13180440-13182175(+) 13182112-13180269(+) 13180323-13181493(-) |
| Potential amino acid sequence |
MSELQIQLPETELLLDLVRKAESCQSQCKEILKAPFSLKNVEVLLQEFKNFTVNIPELMLLKQC HINAVSWISRCNDVLVNLHEREDQDKVVNELNCLLKDAASLRIQVDELPLVELELKKACCRVKV LKARDMKMPLDFIQELMMEAFVLQIEKEKLFVDLSGVIAAVRCWEERATKLLAQEAQMLDFEDI IRTSADIPVLLPLLDDIKDAVAMAKSWLENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLL KISLDERRMLEMVLKNCDEWQQDANSALQDARCILSTDDIDDGKNGCLFGKVEHLATKMESITK AGLSLNFDFAEIPKLQNACSMLRWCSRALSFCTCAPSLEISVLESLYSRFSDLPIYIKESKKLS KKLSSAKIWIDSAKKCISETQSAAVDIDILYKLKSEMSELQIQLPETELLLDLVRKAESCQSQC KEILKAPFSLKNVEVLLQEFKNFTVNIPELMLLKQCHINAVSWISRCNDVLVNLHEREDQDKVV NELNCLLKDAASLRIQVDELPLVELELKKACCRVKVLKARDMKMPLDFIQELMMEAFVLQIEKE KLFVDLSGVIAAVRCWEERATKLLAQEAQMLDFEDIIRTSADIPVLLPLLDDIKDAVAMAKSWL ENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLLKISLDERRMLEMVLKNCDEWQQDANSAL QDARCILSTDDIDDGKNGCLFGKVEHLATKMESITKAGLSLNFDFAEIPKLQNACSMLRWCSRA LSFCTCAPSLEISVLESLYSRFSDLPIYIKESKKLSKKLSSAKIWIDSAKKCISETQSAAVDID ILYKLKSEMSELQIQLPETELLLDLVRKAESCQSQCKEILKAPFSLKNVEVLLQEFKNFTVNIP ELMLLKQCHINAVSWISRCNDVLVNLHEREDQDKVVNELNCLLKDAASLRIQVDELPLVELELK KACCRVKVLKARDMKMPLDFIQELMMEAFVLQIEKEKLFVDLSGVIAAVRCWEERATKLLAQEA QMLDFEDIIRTSADIPVLLPLLDDIKDAVAMAKSWLENSAPFLVSSSSMVSGSVSSLKLEVLKE LVSHSKLLKISLDERRMLEMVLKNCDEWQQDANSALQDARCILSTDDIDDGKNGCLFGKVEHLA TKMESITKAGLSLNFDFAEIPKLQNACSMLRWCSRALSFCTCAPSLEISVLESLYSRFSDLPIY IKESKKLSKKLSSAKIWIDSAKKCISETQSAAVDIDILYKLKSEMSELQIQLPETELLLDLVRK AESCQSQCKEILKAPFSLKNVEVLLQEFKNFTVNIPELMLLKQCHINAVSWISRCNDVLVNLHE REDQDKVVNELNCLLKDAASLRIQVDELPLVELELKKACCRVKVLKARDMKMPLDFIQELMMEA FVLQIEKEKLFVDLSGVIAAVRCWEERATKLLAQEAQMLDFEDIIRTSADIPVLLPLLDDIKDA VAMAKSWLENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLLKISLDERRMLEMVLKNCDEW QQDANSALQDARCILSTDDIDDGKNGCLFGKVEHLATKMESITKAGLSLNFDFAEIPKLQNACS MLRWCSRALSFCTCAPSLE(+) MHVQCCDGALELFLSAPVLLLWRYLCWNHCTRDLVTCQYILKKARSCRKNFHQQRSG*(+) MSTAALCVSDMHFFALSIQIFADESFFDSFLLSLIYIGKSLNLEYSDSSTDISKEGAQVQKERA LEHHRSIEHAFWSFGISAKSKFRDKPALVMDSILVAKCSTFPKRQPFFPSSISSVLRMHLASCN AELASCCHSSQFFRTISSILRSSKDIFSNFECETNSFRTSSLSEETEPDTMELEETKNGAEFSN QDLAIATASLISSSKGRSTGISAEVLIISSKSNI*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Liu et al., 2021 |