Detail information of Os03g0850400_circ_g.2


General Information
CircRNA Name Os03g0850400_circ_g.2
ID in PlantcircBase osa_circ_022731
Alias NA
Organism Oryza sativa
Position chr3: 35790618-35794282  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0850400
Parent gene annotation Similar to Aspartokinase. (Os03t0850400-01)
Parent gene strand +
Alternative splicing Os03g0850400_circ_g.3 Os03g0850400_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0850400-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATTTAGGTATCTCTGTTGATTGTGTGGCTACCAGTGAAGTCAGTATATCATTGACACTAGAT
CCATCAAAACTATGGTGTCGTGAATTGATCCAGCAGgccggagagaaggctgtcagctgcggcg
ccccgaaggcgtctgaaattcccgagctcgcagttatcaaggagctccatgttaggtgcgtttc
gtttttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCGGAGAGAAGGCTGTCAGCTGCGGCGCCCCGAAGGCGTCTGAAATTCCCGAGCTCGCAGTTA
TCAAGGAGCTCCATGTTAGGTGCGTTTCGTTTTTCATTTTTCGTCATTTCAGGTTAGTTTCGGA
GCATTCACTCCTGATTATTCAATTTTTCTTGCTTTGCTCAGGACTATTGATGAGCTTGGATTGG
ATAGATCGATTGTTTCAGGTATTGTCCAGTGCTTCTTTCACAAAATCCCCCCCCCCTCCCCCCA
ACCAACCAACACACACACAAAAATCACTGGAAGCTTAGTCTGTCTGAAGCTTCCCATTTTCCTT
TGGTTGGCAAAAACCTACACTGCAAAATGTATATTCCAATCTTGTTGATGCATTGATTTCCATC
TTTTGGCACATGTATAGTCGTCAAAATATTGCGATTTCACAGTCCTGGTTGGTGTAAGGTTTAG
AAGACCTTATTATTTTAAAGGCCATAAGATGGTCTATCAAAACTACAGGTAATTCAGATTAGGG
CATTGTCATCCACTAAACCACATATCTGTTTTTATTCAGTATAAACTAAAGACCACCCTCTGAT
GGGATTTTTTTTTTAGCTACACAAACAGTCCTCATTACTATACGAAGAAATTTGATTTCAGAAG
TTAGACAATATTTGTGGTTGAGGATTGTCAATAAACACAAGAACACCAATTTTCCTTTAATGTT
GTATGGTGGTGACAAGACTTGAGGTCGTTATCATGCATTTTATGTCATTTTCAGCAGAGTACCT
TTCTATTCTGTATGCAACAAGGTGATCTTGTGTATCCTATAGCTTAGTGCCTCCACCCTAGTTG
GTTTAACTAAAGTAGCGGTTTCTAAAGTAATGTTCATACTTATTCTAACAATGCTTTGAATTCA
TACAATGGACACATAATCATCGAGCAGTCTTAAAGTAGATGAGGCAGCAATTGACATGGCAAGT
GCAGGTGATATACATCACAAGGAAGAAAACACATTGTAATGTTTGTTTTGTTCCAGTTTCTACA
TACAACAACCAAATAATTTAAATGCAGCAAGTATGGAAAATAAACTCCAATTACCCTATTTAGA
ATCCCCAATCTAATGACAATGAAATGGAACATGTGGCTTCTCTCATGATCTAAACCTGTCAGGT
TTCTCTACTTGTTTTATAGCCCACCATGTTTTAAACATGAAAGATTTTAGACAGCTGAAACATG
GTATGCTGCATCCTTAGTTATAAATCATAATACCATTTTAAACTTTCACCAATCATTCTTCAGC
ATATTATCCATTGGTCATCAATTTATTTTTGGTCAATGTAGCATTTCTCGTCCCTTTTGTCTTT
AATGGAAGTACTTTCTTTAGCACTGTACCATCTATAAAAGCACTGTATTTATCACTGTTAATAT
CAACAGGTTTATTGGAAGAATTGGAACAACTTCTTAAGGGTGTTGCTATGATGAAAGAACTAAC
TCCTAGGACACGGGATTACCTTGTTTCCTTCGGTGAATGCATGTCTACAAGAATATTTGCTGCA
TATTTGAATAAACTTGGGAAAAAGGCTCGGCAGGTACATGCTTCTAGTAAATGTGTTGGTGCAG
TAGTTTAATTGAAGGCTTGTTGAGTGCTTTGTTTCAATTTAGCTTCTAGATCCTTTTCATGATA
ATATAATTCAAATATTCTATCTAAAAAAGCAACATCTGGACCTGTGAAAAAAATGAGAGAATAT
TACTACCGTAGCAAATTGACTAGGTTATAGGAATAAGGTAATTTGGGGGACTTCATTACATTTA
TCCCTTGCTCATTTGATTTATAGAGATTGTACATGGTTATTGCTAGTGCAATAGCACAAACTAA
GAAATTTCTTTCCTTATCAATAGAGCTGATCACTTTCCTTTAAACTGCCAACTGAAACCTGCTA
AGAAAAAATGGCGTGCGATCAGTTTATTTATAAAATATACATGAGTAATCCACTAAAACATAGT
TCTTTTCATTTTTTCTTGTTTCATAGTTCTTTTCATTTTTTCTTGTTTCCTTTTAATTTCTCAT
ATTCATTTCACCATAGGAACAATGCTGGTGTTCCATAGTAAGTTGATCTTATTGTGCTTCTATA
TGTGTGTAGTCTTTTTTAATGGATTGTTATTATAATGAGTATATTTTAATTGTTATTTGGTACC
TTTTTGTTCCATCAACACCTAAAAGTTCCTAAGCATGCAGCGTTTACATGAAGTTTCAGTGCGA
GCAGTTATTGGTATATGATGGTGGTCCAGGTTTTAGCTTGACGCTGTCTCAACTAAATTTTGCT
TGATTGCAGTATGATGCATTTGATATTGGCTTTATAACTACTGATGATTTCACAAATGCGGACA
TTCTTGAAGCGACATATCCTGCTGTTGCAAAGAGGTTACAGGGTGATTGGATTGACGACCCTGC
TATTCCTATAGTTACTGGTTTCCTTGGAAAAGTATGCATTTTCCCATTACTCATGTTTAAGGCC
ATCGCGCCTATTCTTTTGCATTTATGATGCTGCACTTGAATTAGATTTGTTATATTTGTGTTTA
TGATAATGCACATCAAATTGCAGGGATGGAAATCATGTGCTGTCACCACTTTAGGCAGAGGTGG
CAGCGACTTGACTGCTACCACCATTGGCAAAGCGTTGGGATTAAGAGAGATCCAGGTTTGTGTT
CCTAAGTTTGTGATAATTACCTGTTGAAAATCCACTTGCTCCCAGAACTCATTCAACACCTTTA
AGCTTCTATGTGTAAACACATTTTCTTAGATCATTCCTTCAGTTTTGTGTTCGTTCTGGTTCTG
CAATTGAGGAAGTTGGTTAGATGTTTAACCATATCAGCTGAAAACTACAGATATGCTTTGTGGT
GTCTCTGAGGTTTTACCGGCTGTTATAACTCTTTTTCTTTTTAAATCTCTAACAGGTATGGAAG
GATGTTGATGGTGTGTTGACATGTGATCCTAATATTTGTGCGAACGCGATACCTGTACCCTACT
TGACTTTTGAGGAGGCAGCTGAACTTGCCTACTTTGGTGCACAGGTATTGTAGAGCTTATTACC
ATGTGTTGATACAATTATTTGACACTCTCACGGTGATTGAGATAGCATGGTCAACTACTGTTGC
CCTAACAGAAATACGTTTGCCAATTGTTAGGTTTTGCATCCCCAATCAATGAGACCAGCCAAAG
AAGGTGATATACCAGTTAGAGTTAAGAATTCATATAACCGTCGAGCACCTGGTACTGTTATTAC
TAAAACAAGAGATTTGAGCAAGGTTCGGCATATGAATAGATTTTGATACGTCTGTTTGTAAATA
CTTCTTGTTAATTTCTGATTTGTGTACATTATTTTTCAGAGTATATTAACCAGCATTGTATTGA
AGTCAAACATTACTATGCTGGATATAGTGAGCACAAGGATGCTTGGCCAGTATGGTTTTCTGGC
GAAGGTATTTTAATATGCTCATTGCTCTTCCTGTTTATTTTGTTGACTTATGCATATTAGTAAT
TTGTTCATATTTTTATGCTCTTGTGCAGGTTTTCTCAATATTTGAAGATTTAGGTATCTCTGTT
GATTGTGTGGCTACCAGTGAAGTCAGTATATCATTGACACTAGATCCATCAAAACTATGGTGTC
GTGAATTGATCCAGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.124275575
Functional Information
Coding potential Y
Potential coding position 35792074-35794279(+)
35790697-35794258(-)
Potential amino acid sequence MMKELTPRTRDYLVSFGECMSTRIFAAYLNKLGKKARQYDAFDIGFITTDDFTNADILEATYPA
VAKRLQGDWIDDPAIPIVTGFLGKGWKSCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGV
LTCDPNICANAIPVPYLTFEEAAELAYFGAQVLHPQSMRPAKEGDIPVRVKNSYNRRAPGTVIT
KTRDLSKSILTSIVLKSNITMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDCVATSEVSISLTL
DPSKLWCRELIQQAGEKAVSCGAPKASEIPELAVIKELHVRTIDELGLDRSIVSGLLEELEQLL
KGVAMMKELTPRTRDYLVSFGECMSTRIFAAYLNKLGKKARQYDAFDIGFITTDDFTNADILEA
TYPAVAKRLQGDWIDDPAIPIVTGFLGKGWKSCAVTTLGRGGSDLTATTIGKALGLREIQVWKD
VDGVLTCDPNICANAIPVPYLTFEEAAELAYFGAQVLHPQSMRPAKEGDIPVRVKNSYNRRAPG
TVITKTRDLSKSILTSIVLKSNITMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDCVATSEVSI
SLTLDPSKLWCRELIQQAGEKAVSCGAPKASEIPELAVIKELHVRTIDELGLDRSIVSGLLEEL
EQLLKGVAMMKELTPRTRDYLVSFGECMSTRIFAAYLNKLGKKARQYDAFDIGFITTDDFTNAD
ILEATYPAVAKRLQGDWIDDPAIPIVTGFLGKGWKSCAVTTLGRGGSDLTATTIGKALGLREIQ
VWKDVDGVLTCDPNICANAIPVPYLTFEEAAELAYFGAQVLHPQSMRPAKEGDIPVRVKNSYNR
RAPGTVITKTRDLSKSILTSIVLKSNITMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDCVATS
EVSISLTLDPSKLWCRELIQQAGEKAVSCGAPKASEIPELAVIKELHVRTIDELGLDRSIVSGL
LEELEQLLKGVAMMKELTPRTRDYLVSFGECMSTRIFAAYLNKLGKKARQYDAFDIGFITTDDF
TNADILEATYPAVAKRLQGDWIDDPAIPIVTGFLGKGWKSCAVTTLGRGGSDLTATTIGKALGL
REIQVWKDVDGVLTCDPNICANAIPVPYLTFEEAAELAYFGAQVLHPQSMRPAKEGDIPVRVKN
SYNRRAPGTVITKTRDLSKSILTSIVLKSNITMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDC
VATSEVSISLTLDPSKLWCRELIQQ(+)
MELLDNCELGNFRRLRGAAADSLLSGLLDQFTTP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017