Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os03g0850400_circ_g.2 |
| ID in PlantcircBase | osa_circ_022731 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr3: 35790618-35794282 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os03g0850400 |
| Parent gene annotation |
Similar to Aspartokinase. (Os03t0850400-01) |
| Parent gene strand | + |
| Alternative splicing | Os03g0850400_circ_g.3 Os03g0850400_circ_g.4 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os03t0850400-01:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.124275575 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
35792074-35794279(+) 35790697-35794258(-) |
| Potential amino acid sequence |
MMKELTPRTRDYLVSFGECMSTRIFAAYLNKLGKKARQYDAFDIGFITTDDFTNADILEATYPA VAKRLQGDWIDDPAIPIVTGFLGKGWKSCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGV LTCDPNICANAIPVPYLTFEEAAELAYFGAQVLHPQSMRPAKEGDIPVRVKNSYNRRAPGTVIT KTRDLSKSILTSIVLKSNITMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDCVATSEVSISLTL DPSKLWCRELIQQAGEKAVSCGAPKASEIPELAVIKELHVRTIDELGLDRSIVSGLLEELEQLL KGVAMMKELTPRTRDYLVSFGECMSTRIFAAYLNKLGKKARQYDAFDIGFITTDDFTNADILEA TYPAVAKRLQGDWIDDPAIPIVTGFLGKGWKSCAVTTLGRGGSDLTATTIGKALGLREIQVWKD VDGVLTCDPNICANAIPVPYLTFEEAAELAYFGAQVLHPQSMRPAKEGDIPVRVKNSYNRRAPG TVITKTRDLSKSILTSIVLKSNITMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDCVATSEVSI SLTLDPSKLWCRELIQQAGEKAVSCGAPKASEIPELAVIKELHVRTIDELGLDRSIVSGLLEEL EQLLKGVAMMKELTPRTRDYLVSFGECMSTRIFAAYLNKLGKKARQYDAFDIGFITTDDFTNAD ILEATYPAVAKRLQGDWIDDPAIPIVTGFLGKGWKSCAVTTLGRGGSDLTATTIGKALGLREIQ VWKDVDGVLTCDPNICANAIPVPYLTFEEAAELAYFGAQVLHPQSMRPAKEGDIPVRVKNSYNR RAPGTVITKTRDLSKSILTSIVLKSNITMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDCVATS EVSISLTLDPSKLWCRELIQQAGEKAVSCGAPKASEIPELAVIKELHVRTIDELGLDRSIVSGL LEELEQLLKGVAMMKELTPRTRDYLVSFGECMSTRIFAAYLNKLGKKARQYDAFDIGFITTDDF TNADILEATYPAVAKRLQGDWIDDPAIPIVTGFLGKGWKSCAVTTLGRGGSDLTATTIGKALGL REIQVWKDVDGVLTCDPNICANAIPVPYLTFEEAAELAYFGAQVLHPQSMRPAKEGDIPVRVKN SYNRRAPGTVITKTRDLSKSILTSIVLKSNITMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDC VATSEVSISLTLDPSKLWCRELIQQ(+) MELLDNCELGNFRRLRGAAADSLLSGLLDQFTTP*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |