Detail information of AT2G03240_circ_g.5


General Information
CircRNA Name AT2G03240_circ_g.5
ID in PlantcircBase ath_circ_012666
Alias 2:975523-975724
Organism Arabidpsis thaliana
Position chr2: 975523-975724  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03240
Parent gene annotation Phosphate transporter PHO1 homolog 5
Parent gene strand -
Alternative splicing NA
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03240.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCAACACGCTCAACGAGTCTAGTAACCTCATCAGAGCTTCCAAGGTAAGAGTTATCAATCAT
TTTCATGTAAGACTTTGAAGCATGCCTTGAAGTTATctgtggagaatgtaattcgatgtctctc
tcgtttagctttgggtctcaagatgttcattccttttgatctgttagcattggagaaatgctta
ataaacgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 202
Transcript exons: 975523-975724
CTGTGGAGAATGTAATTCGATGTCTCTCTCGTTTAGCTTTGGGTCTCAAGATGTTCATTCCTTT
TGATCTGTTAGCATTGGAGAAATGCTTAATAAACGTAGCTTCAACACGCTCAACGAGTCTAGTA
ACCTCATCAGAGCTTCCAAGGTAAGAGTTATCAATCATTTTCATGTAAGACTTTGAAGCATGCC
TTGAAGTTAT

Genomic sequence CTGTGGAGAATGTAATTCGATGTCTCTCTCGTTTAGCTTTGGGTCTCAAGATGTTCATTCCTTT
TGATCTGTTAGCATTGGAGAAATGCTTAATAAACGTAGCTTCAACACGCTCAACGAGTCTAGTA
ACCTCATCAGAGCTTCCAAGGTAAGAGTTATCAATCATTTTCATGTAAGACTTTGAAGCATGCC
TTGAAGTTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.371708806
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020