Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d038006_circ_g.1 |
ID in PlantcircBase | zma_circ_009096 |
Alias | zma_circ_0002364 |
Organism | Zea mays |
Position | chr6: 144962561-144964136 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d038006 |
Parent gene annotation |
Tetratricopeptide repeat (TPR)-like superfamily protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d038006_T002:5 Zm00001d038006_T004:5 Zm00001d038006_T001:5 Zm00001d038006_T005:5 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.163278442 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
144964043-144962666(+) 144964111-144962563(-) 144962773-144964087(-) |
Potential amino acid sequence |
MLSEYNSSLAFRAPLNASSGFPILSRIRALRACKRSLSSSLPRRDPKSPERTSKAVSYFFSCSK IET*(+) MGKPDEALSGALNAKELLYSDNIFHFDDLTLSTLQIVFQRLDRLDLATSCYEYACTKYPSNLEL MMGLFNCYVREYSYVKQQQTALKMYKTVGEERFLLWAVCSIQLQVHFSSGGVKLLALAEALLKK HINSHSLHEPEALSLYVSILEQEKKYDTALEVLSGDLGSLLGREEDKLRLQALKALILERMGKP DEALSGALNAKELLYSDNIFHFDDLTLSTLQIVFQRLDRLDLATSCYEYACTKYPSNLELMMGL FNCYVREYSYVKQQQTALKMYKTVGEERFLLWAVCSIQLQVHFSSGGVKLLALAEALLKKHINS HSLHEPEALSLYVSILEQEKKYDTALEVLSGDLGSLLGREEDKLRLQALKALILERMGKPDEAL SGALNAKELLYSDNIFHFDDLTLSTLQIVFQRLDRLDLATSCYEYACTKYPSNLELMMGLFNCY VREYSYVKQQQTALKMYKTVGEERFLLWAVCSIQLQVHFSSGGVKLLALAEALLKKHINSHSLH EPEALSLYVSILEQEKKYDTALEVLSGDLGSLLGREEDKLRLQALKALILERMGKPDEALSGAL NAKELLYSDNIFHFDDLTLSTLQIVFQRLDRLDLATSCYEYACTKYPSNLELMMGLFNCYVREY SYVKQQQTALKMYKTVGEERFLLWAVCSIQLQVHFSSGGVKLLALAEALLKKHINSHSLHEPEA LSLYVSILEQEKKYDTALEVLSGDLGSLLGREEDKLRLQ(-) MSQKHFLSMFQFWSKRKSMTLLWKFFLETWDLFLEGRRTSFVCRPSRLLFWRGWESLMKH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |