Detail information of AT1G54440_circ_g.7


General Information
CircRNA Name AT1G54440_circ_g.7
ID in PlantcircBase ath_circ_007378
Alias Ath_circ_FC0782
Organism Arabidpsis thaliana
Position chr1: 20326876-20327437  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method circRNA_finder
Parent gene AT1G54440
Parent gene annotation Polynucleotidyl transferase, ribonuclease H fold protein with HR
DC domain-containing protein
Parent gene strand +
Alternative splicing AT1G54440_circ_g.5 AT1G54440_circ_g.6
Support reads 3
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G54440.1:2
AT1G54440.2:2
AT1G54440.4:1
AT1G54440.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTATGACATTTCTTGAATTAGGTGGTTGAAAAGAATATCGAACCTAAGATTGAGAAAACAGGC
ACAGAAGCTTCAGCTTCTTCTCTGAGTTCGAAGAAGgtttgtgtggatgattcaaagaaacaaa
gcagtggttttggagttttgccgttaaagaggaagttggaaagtgacaaaacggtgaggttgtt
atatacta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGTGTGGATGATTCAAAGAAACAAAGCAGTGGTTTTGGAGTTTTGCCGTTAAAGAGGAAGT
TGGAAAGTGACAAAACGGTGAGGTTGTTATATACTATATAGTGTGAGAAGAGAACTTTACATAT
GTGTTTTAAAACTGTAGGTTTTTAGTTAAAGGGTATGTGCTTACCTGCTTGGTGAAAAGCAATT
AGTAGTGATTATATATGATACTTGCTTGAGTGAATAGATTAGGTCATATAGAACCAAGTTTATT
AGGAACTAAATCTTGCACCCTTCAATAGCATGTGGGCCAAAATACTATAACTAGAGGAGACTTA
TTTGCAAGTGCTAATTGCTAATCCAAATGTCTAGTAGTTTCGTGGTGCGAAACCATGAGATGTT
ACTTAAGAGCCATGAGTCATGACTGCTTTATTATTGCATGCACTTGGTAATTATTTATAGTGAA
AATTTTCTCTTTGCTCTATGACATTTCTTGAATTAGGTGGTTGAAAAGAATATCGAACCTAAGA
TTGAGAAAACAGGCACAGAAGCTTCAGCTTCTTCTCTGAGTTCGAAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.551401364
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a