Plant Circular RNA Database

Detail information of Zm00001d016155_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d016155_circ_g.1
					
						ID in PlantcircBase
						zma_circ_008685
					
						Alias
						Zm05circ00088
					
						Organism
						
							Zea mays						
					
						Position
						
							chr5: 147497718-147501525  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Zm00001d016155						
					
						Parent gene annotation
						
							Putative callose synthase 8
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d016155_T001:11
Zm00001d016155_T003:11
Zm00001d016155_T002:11

General Information
CircRNA Name	Zm00001d016155_circ_g.1
ID in PlantcircBase	zma_circ_008685
Alias	Zm05circ00088
Organism	Zea mays
Position	chr5: 147497718-147501525 JBrowse»
Reference genome	AGPv4.38
Type	e-circRNA
Identification method	CIRI2
Parent gene	Zm00001d016155
Parent gene annotation	Putative callose synthase 8
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf, endosperm
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d016155_T001:11 Zm00001d016155_T003:11 Zm00001d016155_T002:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTTACCTTTGAGGATCCACAATCATGTCCTGGACTACAATATCAACAATATCTTGGAGCAGAAT
TGTCACCTCATGCCGATGTTTTTGTTCGTTTATAAActaaggggttcagcaagaaatctttgtc
caattgtaacaaagcttgtctcttgatatgacatgaagccagcaagagatgaaacactgcacaa
ataatagt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTAAGGGGTTCAGCAAGAAATCTTTGTCCAATTGTAACAAAGCTTGTCTCTTGATATGACATGA
AGCCAGCAAGAGATGAAACACTGCACAAATAATAGTATCATAATTATCTTACAAGAGACAAAAC
ATGTTTGAAAGATGTGTGTTGTAAGATTACAGACCTTCCAGTGAAGATATGCTCTCTTAACCCA
AGGATAGTTGGAGCTTTGTCCCTAGGATGCCTTACAAACTCTTGAAGGACATTCCTCATTTTGT
AAGCTTCTTCCAGATAGTTGTCCTGATATCAACTTACATACATCAACATAGAATCTTTAAACAA
ACGAGAACACAGTTATAGAAGCTTGTACAATTCTTTACTTGATTCATATCAATTGTTTGTAGAG
CATCTCCACGAGTGAAGATAATCGCATGGTTCTGATTTTCAGGCTTCCCTTCTCCAATGATAGG
TGGACCAGGCAGCTTTATACGGTAAATCTCCTATGGACATAAACAACAAGTCAGCAAAGGCCCA
GTTACTAGAGGGATTCAAAAAAGAGAATCATAAACTCTTGAAGGACGTTCCTCATTTAATTGTG
ATGATAATTATGCTGATGACTAATGAGAGGTAGTCATGATGATAAAAAAGGAAAGAAGTACTTT
CAAGAGATCTTAGATGTTACAAGATTTTCTAATTTTAGCCTTAATATTAAATCATTACCTGGTC
CAAATTATTCTCTGCTTTTATTAACACAGATGAATAAACCTTATGGGGACAGTTATTTACTATG
ACTTCCTTCCCTTCAACCATATGAGAACAGTTATTTACTATGACTTCCTTCTCTTCAATATAAG
CAACCCTCAGAGCAGGGCACCTTCATATGGCACAAGTGAAAAAGATCAGGATGGCTCTGGTGAT
CATCATTTTTCTAAAGTTATCTATGTTTCAAAGCTATATATGTTATTTCATACCTCATCATCAG
ATCTATGATGTCTTGAGCATGGGGATCACCTTTGATTTTTTGTTCCCCAAACTTCTGACATGAA
ATGACATATGAAAATTTCATATCTGCAAGTGCTTCTAGTTCAGCTGCTAATGCTTGGTGGATAT
TTCTTTTATTTTTTCCTTGCTCAATTGCTAGAAGTGCTTCATATAAATCTGCATAAGTTTTACA
AAACGAATTAGTGGAAACTGTTTCCAAAGAAATAGAGATTAATCCTGTGAAATACAAAAATCAT
TACCAGAACTTTACATGTCTTAACTTCATAATTTCCACCATTGCAGAAATGAGAAATTATTACT
GAATCTCGTTAGCACAAGATTTCCATACGCACCTTGATCATTTGTCATGTCTAAGAGAGCCTGT
AGCTTCAATGCTTTTCTGTAGTACATCATTCCCCGTACTAGATAGTTTGTAATAAAAAAAGTGT
GAGATGAGGTAGACATAGGCTTAAATGGTAATACAACAAGTGAGAATGTGCTCTGGATTACCAG
TTCGGCTCAGTGTTTGGCCACGGTAGGAAGCCCAATATCTAATTTCATCATTAGTTACCTTTGT
ATCAACGCGTTCCAGAAAGTTTTTCCATTGATCTAAAATTACGAGACGAAATCTCAGTAAGGTT
AAGATGGATGCCTCATCTTGATACTCCCTCTGTCCCTAAATTACTGCATATATCGTTTTATGAG
AAGTTAAACTTTTCTTTGTATATTTGGTCAATTTTTAAAAAGCTTGATTCCTCAAAAAACGAGA
TGTGCAGTTTATTTTGGGATGGAGAGAATATATCTTAGTAACATATGGAAATCCAGTATGCCTC
ATATAAACCATGCAAGCAGTTGTTGTAGCAGTCAAAAGAAAGTTTCATTATATATGTGACCTGG
ATATATCTTTTGCATGTACGAAAGGGTGGATGCTTCATCTTGATTTGAATGAAGCTCTTCATCT
GAAAACTTCACTTCTTCCATGAAATATGGAGTTATTACACTGGATAAAGTATGTCATGTCAGGA
TTTAACGACATGTAAAGTGCAACTGTTTTCCATTGGATGCAGGTATCAAAATCATCAAACATAA
AACTATTAACAGTCCAGTAACTTTATTGTGCAGTGATTCTTATTGTTTTTTATTTCATTGCGTT
GATTAACCAGAAGTGATGAAGCCAAAATCATAAAAACTGATGGCTTGTGGTTGCATTTGAGGTT
TTTCATGGTCAATGTTACCATATAACTAAACTATGCGATGGACAGATGGTATGTTACGGACAGG
TAACAACTCTAATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATTAGAGTTGTTACCTGTCCGTA
ACATATATATATATATATATATATATATGTTACGGACAGGTAACATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATAAAGAGAGAGAGAAAGGAGTGT
ATCACGTCTGATTAGATTGATTGATTGACAAGTAGTGAAAGGACCTCTAGCGTAATGGTTAAGG
CTTCCGAGTAGCACCTTCAGGTCCCGAGTTCGAGCTCCTTGGAGGCGAATTTCAGGCTTGGTTA
AAAAAATCCCCTCACTGTGTCCCGCACACTCTCGGGATCGATATCATGCGCGCCACCCTCCGGC
TGGGCCGTTGCAAAGTGGGCAGATGACTCGGCCCGTTAGTGATGGGGTCAGGGTTCGAAAGTTT
TCTCAGCCGGGAGTATGTTTTGGTCTCTTCTTAATATAATACCGGGAAGACGATCTTTCCCTCC
CCGGTCGAGTTTTTTTTATTGCCAAGTACAAGGTACATGTGTATACAGGAAACCATAGGGTGTC
CCTGAGCTAGATCTAGGAGATAATAGACTTTTTGGTCCATTTTGGACCTTGTTATCTTCTTAAT
ATAATGATACACAACTCTCTTGCGTGTTCGAGAAAAAAAAATCTAGGAGATACTGAATGGAGAT
TGTTCAGGGATACAATGAACTATTTACACTTAGCATCACCAGATAGTTTGGATCTGGTTCATCT
CTGAGTAGATCCCATGTTCAAATTATGCTACTTTTAATTGGCAGTGTATGCCATCAATATTTAG
AAATGCGAGTTGATTATAGAAGCAAATCGATGAAGGCCACATTTGTCAGACATGAAAAAAATAA
AGCCCTCCTTGGTTGAAATTTGGGAATATTCAAGGTAAGTTCAAGTGTCCTCTAAAAGCAGAAT
TCTTACCTAAATGACAACATACTGCGAACTTTGGGAGCAGCAGGCATATGCATAAACAGAGATG
TGGCGAAAAATGAAATGCGTCGCCGAGCCTCTAAATTTGATGGTATTTCCGCAGCCTTTTCTTT
TGTACTAAGCAAAAGATAGAAGCGTTTAACCTGAACATGCAATGTCAATTCATCATTCAAAGAG
TTATAATCTGTTCCTTTGTCCTCGGGTAATCAAAGATTTGCTCGGACCTGTTCTTTTTGCTGAT
CAAAATATGGATATCGGATGCTTGTTCTTGAGCTGACTGATGCAAACAGCTCTGGTTCATAATA
GCTGAATGCTCCATCATCATCAGAGATCAATCTCTTTGAAGAGTTAACCACATTCAGTATACTG
TACAAAGAGGACGTTATTGTACTGGTATACACAAAAAGATCAAAGTTTTATTAAAAAATTCTTA
CCTTTGAGGATCCACAATCATGTCCTGGACTACAATATCAACAATATCTTGGAGCAGAATTGTC
ACCTCATGCCGATGTTTTTGTTCGTTTATAAA
						
					

			
		

Sequences
Splice junction sequence	CTTACCTTTGAGGATCCACAATCATGTCCTGGACTACAATATCAACAATATCTTGGAGCAGAAT TGTCACCTCATGCCGATGTTTTTGTTCGTTTATAAActaaggggttcagcaagaaatctttgtc caattgtaacaaagcttgtctcttgatatgacatgaagccagcaagagatgaaacactgcacaa ataatagt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTAAGGGGTTCAGCAAGAAATCTTTGTCCAATTGTAACAAAGCTTGTCTCTTGATATGACATGA AGCCAGCAAGAGATGAAACACTGCACAAATAATAGTATCATAATTATCTTACAAGAGACAAAAC ATGTTTGAAAGATGTGTGTTGTAAGATTACAGACCTTCCAGTGAAGATATGCTCTCTTAACCCA AGGATAGTTGGAGCTTTGTCCCTAGGATGCCTTACAAACTCTTGAAGGACATTCCTCATTTTGT AAGCTTCTTCCAGATAGTTGTCCTGATATCAACTTACATACATCAACATAGAATCTTTAAACAA ACGAGAACACAGTTATAGAAGCTTGTACAATTCTTTACTTGATTCATATCAATTGTTTGTAGAG CATCTCCACGAGTGAAGATAATCGCATGGTTCTGATTTTCAGGCTTCCCTTCTCCAATGATAGG TGGACCAGGCAGCTTTATACGGTAAATCTCCTATGGACATAAACAACAAGTCAGCAAAGGCCCA GTTACTAGAGGGATTCAAAAAAGAGAATCATAAACTCTTGAAGGACGTTCCTCATTTAATTGTG ATGATAATTATGCTGATGACTAATGAGAGGTAGTCATGATGATAAAAAAGGAAAGAAGTACTTT CAAGAGATCTTAGATGTTACAAGATTTTCTAATTTTAGCCTTAATATTAAATCATTACCTGGTC CAAATTATTCTCTGCTTTTATTAACACAGATGAATAAACCTTATGGGGACAGTTATTTACTATG ACTTCCTTCCCTTCAACCATATGAGAACAGTTATTTACTATGACTTCCTTCTCTTCAATATAAG CAACCCTCAGAGCAGGGCACCTTCATATGGCACAAGTGAAAAAGATCAGGATGGCTCTGGTGAT CATCATTTTTCTAAAGTTATCTATGTTTCAAAGCTATATATGTTATTTCATACCTCATCATCAG ATCTATGATGTCTTGAGCATGGGGATCACCTTTGATTTTTTGTTCCCCAAACTTCTGACATGAA ATGACATATGAAAATTTCATATCTGCAAGTGCTTCTAGTTCAGCTGCTAATGCTTGGTGGATAT TTCTTTTATTTTTTCCTTGCTCAATTGCTAGAAGTGCTTCATATAAATCTGCATAAGTTTTACA AAACGAATTAGTGGAAACTGTTTCCAAAGAAATAGAGATTAATCCTGTGAAATACAAAAATCAT TACCAGAACTTTACATGTCTTAACTTCATAATTTCCACCATTGCAGAAATGAGAAATTATTACT GAATCTCGTTAGCACAAGATTTCCATACGCACCTTGATCATTTGTCATGTCTAAGAGAGCCTGT AGCTTCAATGCTTTTCTGTAGTACATCATTCCCCGTACTAGATAGTTTGTAATAAAAAAAGTGT GAGATGAGGTAGACATAGGCTTAAATGGTAATACAACAAGTGAGAATGTGCTCTGGATTACCAG TTCGGCTCAGTGTTTGGCCACGGTAGGAAGCCCAATATCTAATTTCATCATTAGTTACCTTTGT ATCAACGCGTTCCAGAAAGTTTTTCCATTGATCTAAAATTACGAGACGAAATCTCAGTAAGGTT AAGATGGATGCCTCATCTTGATACTCCCTCTGTCCCTAAATTACTGCATATATCGTTTTATGAG AAGTTAAACTTTTCTTTGTATATTTGGTCAATTTTTAAAAAGCTTGATTCCTCAAAAAACGAGA TGTGCAGTTTATTTTGGGATGGAGAGAATATATCTTAGTAACATATGGAAATCCAGTATGCCTC ATATAAACCATGCAAGCAGTTGTTGTAGCAGTCAAAAGAAAGTTTCATTATATATGTGACCTGG ATATATCTTTTGCATGTACGAAAGGGTGGATGCTTCATCTTGATTTGAATGAAGCTCTTCATCT GAAAACTTCACTTCTTCCATGAAATATGGAGTTATTACACTGGATAAAGTATGTCATGTCAGGA TTTAACGACATGTAAAGTGCAACTGTTTTCCATTGGATGCAGGTATCAAAATCATCAAACATAA AACTATTAACAGTCCAGTAACTTTATTGTGCAGTGATTCTTATTGTTTTTTATTTCATTGCGTT GATTAACCAGAAGTGATGAAGCCAAAATCATAAAAACTGATGGCTTGTGGTTGCATTTGAGGTT TTTCATGGTCAATGTTACCATATAACTAAACTATGCGATGGACAGATGGTATGTTACGGACAGG TAACAACTCTAATATATATATATATATATATATATATATATATATATATATATATATATATATA TATATATATATATATATATATATATATATATATATATATATATTAGAGTTGTTACCTGTCCGTA ACATATATATATATATATATATATATATGTTACGGACAGGTAACATATATATATATATATATAT ATATATATATATATATATATATATATATATATATATATATATAAAGAGAGAGAGAAAGGAGTGT ATCACGTCTGATTAGATTGATTGATTGACAAGTAGTGAAAGGACCTCTAGCGTAATGGTTAAGG CTTCCGAGTAGCACCTTCAGGTCCCGAGTTCGAGCTCCTTGGAGGCGAATTTCAGGCTTGGTTA AAAAAATCCCCTCACTGTGTCCCGCACACTCTCGGGATCGATATCATGCGCGCCACCCTCCGGC TGGGCCGTTGCAAAGTGGGCAGATGACTCGGCCCGTTAGTGATGGGGTCAGGGTTCGAAAGTTT TCTCAGCCGGGAGTATGTTTTGGTCTCTTCTTAATATAATACCGGGAAGACGATCTTTCCCTCC CCGGTCGAGTTTTTTTTATTGCCAAGTACAAGGTACATGTGTATACAGGAAACCATAGGGTGTC CCTGAGCTAGATCTAGGAGATAATAGACTTTTTGGTCCATTTTGGACCTTGTTATCTTCTTAAT ATAATGATACACAACTCTCTTGCGTGTTCGAGAAAAAAAAATCTAGGAGATACTGAATGGAGAT TGTTCAGGGATACAATGAACTATTTACACTTAGCATCACCAGATAGTTTGGATCTGGTTCATCT CTGAGTAGATCCCATGTTCAAATTATGCTACTTTTAATTGGCAGTGTATGCCATCAATATTTAG AAATGCGAGTTGATTATAGAAGCAAATCGATGAAGGCCACATTTGTCAGACATGAAAAAAATAA AGCCCTCCTTGGTTGAAATTTGGGAATATTCAAGGTAAGTTCAAGTGTCCTCTAAAAGCAGAAT TCTTACCTAAATGACAACATACTGCGAACTTTGGGAGCAGCAGGCATATGCATAAACAGAGATG TGGCGAAAAATGAAATGCGTCGCCGAGCCTCTAAATTTGATGGTATTTCCGCAGCCTTTTCTTT TGTACTAAGCAAAAGATAGAAGCGTTTAACCTGAACATGCAATGTCAATTCATCATTCAAAGAG TTATAATCTGTTCCTTTGTCCTCGGGTAATCAAAGATTTGCTCGGACCTGTTCTTTTTGCTGAT CAAAATATGGATATCGGATGCTTGTTCTTGAGCTGACTGATGCAAACAGCTCTGGTTCATAATA GCTGAATGCTCCATCATCATCAGAGATCAATCTCTTTGAAGAGTTAACCACATTCAGTATACTG TACAAAGAGGACGTTATTGTACTGGTATACACAAAAAGATCAAAGTTTTATTAAAAAATTCTTA CCTTTGAGGATCCACAATCATGTCCTGGACTACAATATCAACAATATCTTGGAGCAGAATTGTC ACCTCATGCCGATGTTTTTGTTCGTTTATAAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.13823355

Conservation Information
Conserved circRNAs	NA
PMCS	0.13823355

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							147501450-147497718(+)
147501500-147497768(+)
147501452-147501521(-)
						
						Potential amino acid sequence
						
							MSWTTISTISWSRIVTSCRCFCSFIN*(+)
MPMFLFVYKLRGSARNLCPIVTKLVS*(+)
MIVDPQSILNVVNSSKRLISDDDGAFSYYEPELFASVSSRTSIRYPYFDQQKEQVKRFYLLLST
KEKAAEIPSNLEARRRISFFATSLFMHMPAAPKVRSMLSFSVITPYFMEEVKFSDEELHSNQDE
ASTLSYMQKIYPDQWKNFLERVDTKVTNDEIRYWASYRGQTLSRTVRGMMYYRKALKLQALLDM
TNDQDLYEALLAIEQGKNKRNIHQALAAELEALADMKFSYVISCQKFGEQKIKGDPHAQDIIDL
MMRCPALRVAYIEEKEVIVNNCSHMVEGKEVIVNNCPHKVYSSVLIKAENNLDQEIYRIKLPGP
PIIGEGKPENQNHAIIFTRGDALQTIDMNQDNYLEEAYKMRNVLQEFVRHPRDKAPTILGLREH
IFTGSVSSLAGFMSYQETSFVTIGQRFLAEPLSL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	147501450-147497718(+) 147501500-147497768(+) 147501452-147501521(-)
Potential amino acid sequence	MSWTTISTISWSRIVTSCRCFCSFIN(+) MPMFLFVYKLRGSARNLCPIVTKLVS(+) MIVDPQSILNVVNSSKRLISDDDGAFSYYEPELFASVSSRTSIRYPYFDQQKEQVKRFYLLLST KEKAAEIPSNLEARRRISFFATSLFMHMPAAPKVRSMLSFSVITPYFMEEVKFSDEELHSNQDE ASTLSYMQKIYPDQWKNFLERVDTKVTNDEIRYWASYRGQTLSRTVRGMMYYRKALKLQALLDM TNDQDLYEALLAIEQGKNKRNIHQALAAELEALADMKFSYVISCQKFGEQKIKGDPHAQDIIDL MMRCPALRVAYIEEKEVIVNNCSHMVEGKEVIVNNCPHKVYSSVLIKAENNLDQEIYRIKLPGP PIIGEGKPENQNHAIIFTRGDALQTIDMNQDNYLEEAYKMRNVLQEFVRHPRDKAPTILGLREH IFTGSVSSLAGFMSYQETSFVTIGQRFLAEPLSL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Han et al., 2020

circRNA

Detail information of Zm00001d016155_circ_g.1

Address

Any questions?

Supported by